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STREME - Sensitive, Thorough, Rapid, Enriched Motif Elicitation
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MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800)

For further information on how to interpret these results please access https://meme-suite.org/meme.
To get a copy of the MEME Suite software please access https://meme-suite.org.

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REFERENCE
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If you use this program in your research, please cite:

Timothy L. Bailey,
"STREME: Accurate and versatile sequence motif discovery",
bioRxiv, (preprint), Nov. 23, 2020.
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ALPHABET= ACGT

strands: + -

Background letter frequencies
A 0.159 C 0.341 G 0.341 T 0.159 

MOTIF 1-TCTCCMCG STREME-1
letter-probability matrix: alength= 4 w= 8 nsites= 60 P= 4.9e-002
 0.000450 0.000963 0.000963 0.997624
 0.047737 0.751962 0.154854 0.045447
 0.020039 0.000963 0.048314 0.930684
 0.087042 0.891956 0.000963 0.020039
 0.000450 0.880413 0.079509 0.039628
 0.484257 0.296359 0.053500 0.165884
 0.039628 0.762341 0.138752 0.059280
 0.000450 0.028662 0.931261 0.039628

MOTIF 2-CSCCTTCC STREME-2
letter-probability matrix: alength= 4 w= 8 nsites= 25 P= 3.0e-001
 0.001381 0.994281 0.002958 0.001381
 0.001381 0.630461 0.366778 0.001381
 0.001381 0.994281 0.002958 0.001381
 0.001381 0.752520 0.244718 0.001381
 0.001381 0.002958 0.002958 0.992703
 0.001381 0.002958 0.002958 0.992703
 0.061529 0.934132 0.002958 0.001381
 0.001381 0.982776 0.014463 0.001381

MOTIF 3-CCASGGCC STREME-3
letter-probability matrix: alength= 4 w= 8 nsites= 26 P= 3.3e-001
 0.001850 0.992334 0.003965 0.001850
 0.001850 0.992334 0.003965 0.001850
 0.990219 0.003965 0.003965 0.001850
 0.001850 0.550715 0.445584 0.001850
 0.001850 0.003965 0.992334 0.001850
 0.001850 0.003965 0.992334 0.001850
 0.001850 0.992334 0.003965 0.001850
 0.001850 0.992334 0.003965 0.001850

MOTIF 4-TGACCATC STREME-4
letter-probability matrix: alength= 4 w= 8 nsites= 39 P= 5.0e-001
 0.090394 0.031357 0.061340 0.816909
 0.000686 0.245352 0.753276 0.000686
 0.628837 0.215755 0.154721 0.000686
 0.060460 0.937385 0.001470 0.000686
 0.030573 0.907498 0.031357 0.030573
 0.996374 0.001470 0.001470 0.000686
 0.090443 0.001470 0.061340 0.846748
 0.000686 0.634651 0.304156 0.060508

MOTIF 5-CAGGGCAG STREME-5
letter-probability matrix: alength= 4 w= 8 nsites= 29 P= 1.0e+000
 0.001790 0.861440 0.003835 0.132936
 0.990541 0.003835 0.003835 0.001790
 0.001790 0.036113 0.960308 0.001790
 0.001790 0.003835 0.992586 0.001790
 0.001790 0.003835 0.992586 0.001790
 0.001790 0.977672 0.003835 0.016703
 0.990541 0.003835 0.003835 0.001790
 0.001790 0.003835 0.679183 0.315193

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Stopped because maximum number of motifs (5) reached.
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COMMAND:	streme --p ../result/final_prediction/K562/fasta/RankLinear5.0_60/RBM14.fasta --oc ../result/final_prediction/K562/inference_raw/STREME/RankLinear5.0_60_RBM14/ --w 8 --nmotifs 5 --verbosity 1
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CPU:		c23n03.farnam.hpc.yale.internal
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FINALTIME:	1.31 seconds
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