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STREME - Sensitive, Thorough, Rapid, Enriched Motif Elicitation
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MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800)

For further information on how to interpret these results please access https://meme-suite.org/meme.
To get a copy of the MEME Suite software please access https://meme-suite.org.

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REFERENCE
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If you use this program in your research, please cite:

Timothy L. Bailey,
"STREME: Accurate and versatile sequence motif discovery",
bioRxiv, (preprint), Nov. 23, 2020.
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ALPHABET= ACGT

strands: + -

Background letter frequencies
A 0.148 C 0.352 G 0.352 T 0.148 

MOTIF 1-CCGCCATC STREME-1
letter-probability matrix: alength= 4 w= 8 nsites= 57 P= 2.4e-002
 0.000653 0.935962 0.001551 0.061835
 0.000653 0.931363 0.067332 0.000653
 0.000653 0.001551 0.966504 0.031293
 0.153757 0.844040 0.001551 0.000653
 0.031195 0.966602 0.001551 0.000653
 0.702766 0.001551 0.295031 0.000653
 0.000653 0.001551 0.001551 0.996246
 0.061835 0.771141 0.115002 0.052023

MOTIF 2-AAAGCCGA STREME-2
letter-probability matrix: alength= 4 w= 8 nsites= 50 P= 2.1e-001
 0.967306 0.001478 0.001478 0.029738
 0.926867 0.062383 0.010128 0.000622
 0.646190 0.235060 0.059803 0.058947
 0.000622 0.149917 0.819724 0.029738
 0.117084 0.618211 0.205851 0.058853
 0.012675 0.810438 0.118034 0.058853
 0.029738 0.001478 0.909931 0.058853
 0.811150 0.069723 0.118505 0.000622

MOTIF 3-GCGGCCGA STREME-3
letter-probability matrix: alength= 4 w= 8 nsites= 36 P= 7.0e-001
 0.000922 0.002190 0.995966 0.000922
 0.000922 0.598309 0.227128 0.173642
 0.000922 0.002190 0.995966 0.000922
 0.044136 0.175608 0.779334 0.000922
 0.173642 0.693811 0.002190 0.130358
 0.000922 0.995966 0.002190 0.000922
 0.000922 0.002190 0.995966 0.000922
 0.994697 0.002190 0.002190 0.000922

MOTIF 4-CTGCGACC STREME-4
letter-probability matrix: alength= 4 w= 8 nsites= 34 P= 7.9e-001
 0.000778 0.996597 0.001848 0.000778
 0.073690 0.001848 0.001848 0.922614
 0.197951 0.001848 0.799423 0.000778
 0.073690 0.923684 0.001848 0.000778
 0.000778 0.243323 0.703657 0.052243
 0.811761 0.001848 0.001848 0.184543
 0.000778 0.996597 0.001848 0.000778
 0.000778 0.762673 0.162859 0.073690

MOTIF 5-CACACACG STREME-5
letter-probability matrix: alength= 4 w= 8 nsites= 20 P= 1.0e+000
 0.001509 0.922777 0.003585 0.072129
 0.991321 0.003585 0.003585 0.001509
 0.072129 0.852158 0.074205 0.001509
 0.849854 0.003585 0.145052 0.001509
 0.001509 0.851930 0.145052 0.001509
 0.991321 0.003585 0.003585 0.001509
 0.001509 0.993397 0.003585 0.001509
 0.142975 0.145052 0.639844 0.072129

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Stopped because maximum number of motifs (5) reached.
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COMMAND:	streme --p ../result/final_prediction/K562/fasta/RankLinear5.0_60/RBFOX2.fasta --oc ../result/final_prediction/K562/inference_raw/STREME/RankLinear5.0_60_RBFOX2/ --w 8 --nmotifs 5 --verbosity 1
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CPU:		c22n04.farnam.hpc.yale.internal
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FINALTIME:	1.70 seconds
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