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STREME - Sensitive, Thorough, Rapid, Enriched Motif Elicitation
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MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800)

For further information on how to interpret these results please access https://meme-suite.org/meme.
To get a copy of the MEME Suite software please access https://meme-suite.org.

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REFERENCE
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If you use this program in your research, please cite:

Timothy L. Bailey,
"STREME: Accurate and versatile sequence motif discovery",
bioRxiv, (preprint), Nov. 23, 2020.
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ALPHABET= ACGT

strands: + -

Background letter frequencies
A 0.142 C 0.358 G 0.358 T 0.142 

MOTIF 1-CCAGTCCC STREME-1
letter-probability matrix: alength= 4 w= 8 nsites= 16 P= 5.0e-001
 0.001394 0.993686 0.003525 0.001394
 0.001394 0.788422 0.208790 0.001394
 0.991555 0.003525 0.003525 0.001394
 0.029627 0.003525 0.965453 0.001394
 0.001394 0.003525 0.003525 0.991555
 0.069596 0.925484 0.003525 0.001394
 0.138017 0.857064 0.003525 0.001394
 0.001394 0.993686 0.003525 0.001394

MOTIF 2-AACACGGC STREME-2
letter-probability matrix: alength= 4 w= 8 nsites= 12 P= 1.0e+000
 0.921973 0.032573 0.032573 0.012882
 0.921973 0.032573 0.032573 0.012882
 0.012882 0.941664 0.032573 0.012882
 0.921973 0.032573 0.032573 0.012882
 0.012882 0.941664 0.032573 0.012882
 0.012882 0.032573 0.941664 0.012882
 0.012882 0.032573 0.941664 0.012882
 0.012882 0.941664 0.032573 0.012882

MOTIF 3-CGCTGGGC STREME-3
letter-probability matrix: alength= 4 w= 8 nsites= 12 P= 1.0e+000
 0.012882 0.941664 0.032573 0.012882
 0.012882 0.032573 0.941664 0.012882
 0.012882 0.941664 0.032573 0.012882
 0.012882 0.032573 0.032573 0.921973
 0.012882 0.032573 0.941664 0.012882
 0.012882 0.032573 0.941664 0.012882
 0.012882 0.032573 0.941664 0.012882
 0.012882 0.941664 0.032573 0.012882

MOTIF 4-AGAGCCGG STREME-4
letter-probability matrix: alength= 4 w= 8 nsites= 12 P= 1.0e+000
 0.990193 0.004094 0.004094 0.001619
 0.001619 0.004094 0.992668 0.001619
 0.990193 0.004094 0.004094 0.001619
 0.239985 0.242460 0.515936 0.001619
 0.034405 0.959882 0.004094 0.001619
 0.001619 0.992668 0.004094 0.001619
 0.001619 0.004094 0.992668 0.001619
 0.001619 0.004094 0.992668 0.001619

MOTIF 5-AGTTCGCG STREME-5
letter-probability matrix: alength= 4 w= 8 nsites= 21 P= 1.0e+000
 0.972386 0.024608 0.002154 0.000852
 0.084331 0.002154 0.912663 0.000852
 0.042525 0.029936 0.043827 0.883713
 0.000852 0.019405 0.136069 0.843674
 0.084197 0.745972 0.168979 0.000852
 0.000852 0.043827 0.912797 0.042525
 0.000852 0.829317 0.127306 0.042525
 0.000852 0.127306 0.787510 0.084331

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Stopped because maximum number of motifs (5) reached.
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COMMAND:	streme --p ../result/final_prediction/K562/fasta/RankLinear5.0_60/RBBP5.fasta --oc ../result/final_prediction/K562/inference_raw/STREME/RankLinear5.0_60_RBBP5/ --w 8 --nmotifs 5 --verbosity 1
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CPU:		c23n03.farnam.hpc.yale.internal
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FINALTIME:	1.31 seconds
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