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STREME - Sensitive, Thorough, Rapid, Enriched Motif Elicitation
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MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800)

For further information on how to interpret these results please access https://meme-suite.org/meme.
To get a copy of the MEME Suite software please access https://meme-suite.org.

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REFERENCE
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If you use this program in your research, please cite:

Timothy L. Bailey,
"STREME: Accurate and versatile sequence motif discovery",
bioRxiv, (preprint), Nov. 23, 2020.
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ALPHABET= ACGT

strands: + -

Background letter frequencies
A 0.26 C 0.24 G 0.24 T 0.26 

MOTIF 1-AGRTGGCR STREME-1
letter-probability matrix: alength= 4 w= 8 nsites= 178 P= 3.5e-005
 0.995820 0.003601 0.000278 0.000301
 0.000301 0.016332 0.983065 0.000301
 0.445361 0.000278 0.554060 0.000301
 0.000301 0.021806 0.264417 0.713475
 0.000301 0.000278 0.975012 0.024409
 0.000301 0.000278 0.831653 0.167768
 0.000301 0.854345 0.000278 0.145076
 0.595175 0.000278 0.404246 0.000301

MOTIF 2-AMTTGMAA STREME-2
letter-probability matrix: alength= 4 w= 8 nsites= 39 P= 1.7e-001
 0.893089 0.001189 0.001189 0.104534
 0.374233 0.623290 0.001189 0.001289
 0.001289 0.001189 0.001189 0.996334
 0.001289 0.069871 0.001189 0.927652
 0.235696 0.001189 0.658748 0.104368
 0.618082 0.379441 0.001189 0.001289
 0.961993 0.001189 0.001189 0.035630
 0.801209 0.069871 0.127631 0.001289

MOTIF 3-GGCTTAGA STREME-3
letter-probability matrix: alength= 4 w= 8 nsites= 25 P= 2.4e-001
 0.018847 0.001445 0.978142 0.001566
 0.085187 0.043188 0.799849 0.071776
 0.001566 0.953679 0.043188 0.001566
 0.127200 0.001445 0.001445 0.869911
 0.001566 0.085065 0.043188 0.870180
 0.995544 0.001445 0.001445 0.001566
 0.018847 0.085065 0.894522 0.001566
 0.945817 0.043188 0.001445 0.009551

MOTIF 4-ATGGTATT STREME-4
letter-probability matrix: alength= 4 w= 8 nsites= 16 P= 2.4e-001
 0.992472 0.002441 0.002441 0.002646
 0.214898 0.072964 0.143714 0.568425
 0.002646 0.002441 0.992266 0.002646
 0.002646 0.002441 0.850994 0.143919
 0.002646 0.002441 0.002441 0.992472
 0.992472 0.002441 0.002441 0.002646
 0.002646 0.002441 0.002441 0.992472
 0.073169 0.072964 0.002441 0.851426

MOTIF 5-GTTGTCAT STREME-5
letter-probability matrix: alength= 4 w= 8 nsites= 36 P= 7.6e-001
 0.001011 0.027864 0.970115 0.001011
 0.001011 0.000932 0.041329 0.956728
 0.108823 0.054795 0.136111 0.700271
 0.162772 0.174162 0.662055 0.001011
 0.001011 0.000932 0.000932 0.997125
 0.162772 0.808353 0.000932 0.027942
 0.835190 0.081987 0.081813 0.001011
 0.108910 0.108918 0.027864 0.754309

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Stopped because maximum number of motifs (5) reached.
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COMMAND:	streme --p ../result/final_prediction/K562/fasta/RankLinear5.0_60/RAD21.fasta --oc ../result/final_prediction/K562/inference_raw/STREME/RankLinear5.0_60_RAD21/ --w 8 --nmotifs 5 --verbosity 1
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CPU:		c22n09.farnam.hpc.yale.internal
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FINALTIME:	1.67 seconds
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