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STREME - Sensitive, Thorough, Rapid, Enriched Motif Elicitation
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MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800)

For further information on how to interpret these results please access https://meme-suite.org/meme.
To get a copy of the MEME Suite software please access https://meme-suite.org.

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REFERENCE
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If you use this program in your research, please cite:

Timothy L. Bailey,
"STREME: Accurate and versatile sequence motif discovery",
bioRxiv, (preprint), Nov. 23, 2020.
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ALPHABET= ACGT

strands: + -

Background letter frequencies
A 0.268 C 0.232 G 0.232 T 0.268 

MOTIF 1-CTGTATAC STREME-1
letter-probability matrix: alength= 4 w= 8 nsites= 138 P= 2.9e-004
 0.023397 0.962096 0.012430 0.002076
 0.000993 0.000398 0.000398 0.998211
 0.012356 0.012295 0.974889 0.000460
 0.048276 0.032393 0.005323 0.914008
 0.842205 0.024229 0.097292 0.036274
 0.012395 0.015690 0.012295 0.959621
 0.725827 0.012295 0.239775 0.022104
 0.024291 0.951913 0.000398 0.023397

MOTIF 2-CTCAATAA STREME-2
letter-probability matrix: alength= 4 w= 8 nsites= 113 P= 1.8e-003
 0.000457 0.939182 0.000396 0.059965
 0.000457 0.110103 0.000396 0.889044
 0.012282 0.835160 0.020285 0.132273
 0.950317 0.020285 0.017116 0.012282
 0.891714 0.000396 0.036043 0.071847
 0.013717 0.000396 0.000396 0.985492
 0.927611 0.012221 0.035985 0.024183
 0.923251 0.022569 0.006308 0.047871

MOTIF 3-ACCTACTG STREME-3
letter-probability matrix: alength= 4 w= 8 nsites= 27 P= 2.4e-001
 0.721461 0.001281 0.255160 0.022099
 0.001480 0.979918 0.001281 0.017321
 0.001480 0.919597 0.001281 0.077642
 0.039747 0.001281 0.039548 0.919424
 0.995959 0.001281 0.001281 0.001480
 0.001480 0.842444 0.077939 0.078138
 0.001480 0.039548 0.039548 0.919424
 0.039747 0.020415 0.928049 0.011789

MOTIF 4-TCCAAAAA STREME-4
letter-probability matrix: alength= 4 w= 8 nsites= 16 P= 2.4e-001
 0.024364 0.021091 0.021091 0.933455
 0.024364 0.930182 0.021091 0.024364
 0.024364 0.930182 0.021091 0.024364
 0.933455 0.021091 0.021091 0.024364
 0.933455 0.021091 0.021091 0.024364
 0.933455 0.021091 0.021091 0.024364
 0.933455 0.021091 0.021091 0.024364
 0.933455 0.021091 0.021091 0.024364

MOTIF 5-ATAAATGC STREME-5
letter-probability matrix: alength= 4 w= 8 nsites= 27 P= 1.0e+000
 0.931429 0.001088 0.066225 0.001257
 0.001257 0.001088 0.001088 0.996566
 0.883769 0.001088 0.066225 0.048917
 0.789323 0.055779 0.098951 0.055948
 0.847837 0.066225 0.084681 0.001257
 0.001257 0.033604 0.001088 0.964050
 0.033773 0.033604 0.931365 0.001257
 0.001257 0.815749 0.138095 0.044899

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Stopped because maximum number of motifs (5) reached.
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COMMAND:	streme --p ../result/final_prediction/K562/fasta/RankLinear5.0_60/PYGO2.fasta --oc ../result/final_prediction/K562/inference_raw/STREME/RankLinear5.0_60_PYGO2/ --w 8 --nmotifs 5 --verbosity 1
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CPU:		c22n07.farnam.hpc.yale.internal
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FINALTIME:	1.60 seconds
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