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STREME - Sensitive, Thorough, Rapid, Enriched Motif Elicitation
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MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800)

For further information on how to interpret these results please access https://meme-suite.org/meme.
To get a copy of the MEME Suite software please access https://meme-suite.org.

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REFERENCE
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If you use this program in your research, please cite:

Timothy L. Bailey,
"STREME: Accurate and versatile sequence motif discovery",
bioRxiv, (preprint), Nov. 23, 2020.
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ALPHABET= ACGT

strands: + -

Background letter frequencies
A 0.279 C 0.221 G 0.221 T 0.279 

MOTIF 1-CAAGATGG STREME-1
letter-probability matrix: alength= 4 w= 8 nsites= 114 P= 4.8e-003
 0.001182 0.942347 0.001997 0.054475
 0.969791 0.002696 0.018178 0.009335
 0.984158 0.000285 0.006250 0.009307
 0.211897 0.101148 0.668615 0.018340
 0.990123 0.000285 0.009232 0.000360
 0.000360 0.000285 0.000285 0.999069
 0.009307 0.018178 0.963209 0.009307
 0.009321 0.000285 0.986330 0.004064

MOTIF 2-AAAATRAG STREME-2
letter-probability matrix: alength= 4 w= 8 nsites= 62 P= 1.7e-001
 0.907164 0.021441 0.035611 0.035784
 0.977060 0.021441 0.000663 0.000836
 0.993864 0.000663 0.004637 0.000836
 0.903127 0.084178 0.000663 0.012032
 0.000836 0.042286 0.000663 0.956215
 0.419744 0.035611 0.387238 0.157407
 0.991332 0.000663 0.004082 0.003922
 0.046500 0.021441 0.910445 0.021614

MOTIF 3-ACAGCAAC STREME-3
letter-probability matrix: alength= 4 w= 8 nsites= 61 P= 3.0e-001
 0.944397 0.053700 0.000842 0.001062
 0.187052 0.554099 0.178542 0.080306
 0.716567 0.000842 0.000842 0.281750
 0.001062 0.000842 0.997035 0.001062
 0.001062 0.917599 0.000842 0.080497
 0.970868 0.000842 0.000842 0.027448
 0.929420 0.000842 0.000842 0.068896
 0.001062 0.997035 0.000842 0.001062

MOTIF 4-CCCAGTAG STREME-4
letter-probability matrix: alength= 4 w= 8 nsites= 27 P= 5.0e-001
 0.001512 0.995777 0.001199 0.001512
 0.001512 0.958197 0.038779 0.001512
 0.076793 0.769934 0.076480 0.076793
 0.996090 0.001199 0.001199 0.001512
 0.001512 0.001199 0.920496 0.076793
 0.001512 0.001199 0.001199 0.996090
 0.996090 0.001199 0.001199 0.001512
 0.001512 0.001199 0.995777 0.001512

MOTIF 5-GCTGAGAC STREME-5
letter-probability matrix: alength= 4 w= 8 nsites= 43 P= 7.0e-001
 0.120703 0.000948 0.877152 0.001196
 0.017217 0.980639 0.000948 0.001196
 0.120703 0.000948 0.000948 0.877400
 0.001196 0.000948 0.996659 0.001196
 0.967174 0.000948 0.030681 0.001196
 0.070888 0.060509 0.867407 0.001196
 0.996907 0.000948 0.000948 0.001196
 0.001196 0.847033 0.000948 0.150822

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Stopped because maximum number of motifs (5) reached.
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COMMAND:	streme --p ../result/final_prediction/K562/fasta/RankLinear5.0_60/PTRF.fasta --oc ../result/final_prediction/K562/inference_raw/STREME/RankLinear5.0_60_PTRF/ --w 8 --nmotifs 5 --verbosity 1
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CPU:		c17n10.farnam.hpc.yale.internal
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FINALTIME:	1.55 seconds
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