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STREME - Sensitive, Thorough, Rapid, Enriched Motif Elicitation
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MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800)

For further information on how to interpret these results please access https://meme-suite.org/meme.
To get a copy of the MEME Suite software please access https://meme-suite.org.

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REFERENCE
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If you use this program in your research, please cite:

Timothy L. Bailey,
"STREME: Accurate and versatile sequence motif discovery",
bioRxiv, (preprint), Nov. 23, 2020.
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ALPHABET= ACGT

strands: + -

Background letter frequencies
A 0.226 C 0.274 G 0.274 T 0.226 

MOTIF 1-CAGTTTCC STREME-1
letter-probability matrix: alength= 4 w= 8 nsites= 80 P= 2.5e-002
 0.021117 0.895469 0.041779 0.041635
 0.880052 0.041779 0.062165 0.016004
 0.000666 0.021261 0.977407 0.000666
 0.000666 0.058334 0.011035 0.929965
 0.021117 0.066531 0.050422 0.861930
 0.041635 0.001739 0.035208 0.921418
 0.000666 0.940334 0.000810 0.058190
 0.057705 0.767931 0.082682 0.091682

MOTIF 2-AGGTCACA STREME-2
letter-probability matrix: alength= 4 w= 8 nsites= 51 P= 1.7e-001
 0.891555 0.000916 0.047278 0.060251
 0.093777 0.024060 0.835048 0.047115
 0.006988 0.000916 0.984467 0.007629
 0.000753 0.000916 0.000916 0.997414
 0.000753 0.904554 0.093940 0.000753
 0.987834 0.000916 0.010497 0.000753
 0.000753 0.993151 0.000916 0.005180
 0.866899 0.057059 0.000916 0.075126

MOTIF 3-CATTTTAC STREME-3
letter-probability matrix: alength= 4 w= 8 nsites= 55 P= 3.5e-001
 0.000650 0.994091 0.000790 0.004468
 0.977804 0.000790 0.020755 0.000650
 0.020615 0.009055 0.020755 0.949575
 0.000650 0.000790 0.000790 0.997769
 0.000650 0.020820 0.000790 0.977740
 0.000650 0.142140 0.040785 0.816425
 0.869231 0.060976 0.060878 0.008915
 0.040644 0.857444 0.000790 0.101121

MOTIF 4-ATGGCTCC STREME-4
letter-probability matrix: alength= 4 w= 8 nsites= 18 P= 5.0e-001
 0.929600 0.024945 0.024945 0.020509
 0.020509 0.024945 0.024945 0.929600
 0.020509 0.024945 0.934036 0.020509
 0.020509 0.024945 0.934036 0.020509
 0.020509 0.934036 0.024945 0.020509
 0.020509 0.024945 0.024945 0.929600
 0.020509 0.934036 0.024945 0.020509
 0.020509 0.934036 0.024945 0.020509

MOTIF 5-AAGGCCCT STREME-5
letter-probability matrix: alength= 4 w= 8 nsites= 25 P= 5.0e-001
 0.929600 0.024945 0.024945 0.020509
 0.929600 0.024945 0.024945 0.020509
 0.020509 0.024945 0.934036 0.020509
 0.020509 0.024945 0.934036 0.020509
 0.020509 0.934036 0.024945 0.020509
 0.020509 0.934036 0.024945 0.020509
 0.020509 0.934036 0.024945 0.020509
 0.020509 0.024945 0.024945 0.929600

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Stopped because maximum number of motifs (5) reached.
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COMMAND:	streme --p ../result/final_prediction/K562/fasta/RankLinear5.0_60/PTBP1.fasta --oc ../result/final_prediction/K562/inference_raw/STREME/RankLinear5.0_60_PTBP1/ --w 8 --nmotifs 5 --verbosity 1
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CPU:		c22n04.farnam.hpc.yale.internal
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FINALTIME:	1.67 seconds
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