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STREME - Sensitive, Thorough, Rapid, Enriched Motif Elicitation
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MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800)

For further information on how to interpret these results please access https://meme-suite.org/meme.
To get a copy of the MEME Suite software please access https://meme-suite.org.

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REFERENCE
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If you use this program in your research, please cite:

Timothy L. Bailey,
"STREME: Accurate and versatile sequence motif discovery",
bioRxiv, (preprint), Nov. 23, 2020.
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ALPHABET= ACGT

strands: + -

Background letter frequencies
A 0.197 C 0.303 G 0.303 T 0.197 

MOTIF 1-MTGCGCAK STREME-1
letter-probability matrix: alength= 4 w= 8 nsites= 50 P= 1.7e-001
 0.392178 0.432752 0.174341 0.000729
 0.000729 0.001124 0.001124 0.997023
 0.000729 0.001124 0.997418 0.000729
 0.000729 0.997418 0.001124 0.000729
 0.000729 0.001124 0.997418 0.000729
 0.000729 0.997418 0.001124 0.000729
 0.997023 0.001124 0.001124 0.000729
 0.000729 0.174341 0.432752 0.392178

MOTIF 2-CGCCGTAG STREME-2
letter-probability matrix: alength= 4 w= 8 nsites= 41 P= 2.1e-001
 0.001423 0.844235 0.052383 0.101958
 0.087896 0.052383 0.858297 0.001423
 0.001423 0.994956 0.002197 0.001423
 0.001423 0.944770 0.052383 0.001423
 0.001423 0.052383 0.944770 0.001423
 0.001423 0.002197 0.002197 0.994183
 0.843462 0.102731 0.002197 0.051610
 0.001423 0.102731 0.844235 0.051610

MOTIF 3-CAGCCTSG STREME-3
letter-probability matrix: alength= 4 w= 8 nsites= 37 P= 5.0e-001
 0.031738 0.904210 0.063176 0.000875
 0.903535 0.001351 0.094239 0.000875
 0.114610 0.001351 0.883163 0.000875
 0.000875 0.996898 0.001351 0.000875
 0.037641 0.923366 0.007254 0.031738
 0.000875 0.063276 0.032214 0.903635
 0.031738 0.347543 0.558018 0.062701
 0.000875 0.001351 0.996898 0.000875

MOTIF 4-GGGACAAA STREME-4
letter-probability matrix: alength= 4 w= 8 nsites= 15 P= 8.8e-001
 0.001864 0.134502 0.861771 0.001864
 0.001864 0.002876 0.993397 0.001864
 0.001864 0.002876 0.993397 0.001864
 0.860758 0.002876 0.002876 0.133490
 0.001864 0.927689 0.002876 0.067571
 0.860970 0.068583 0.068583 0.001864
 0.926677 0.002876 0.002876 0.067571
 0.992384 0.002876 0.002876 0.001864

MOTIF 5-CCCCACCA STREME-5
letter-probability matrix: alength= 4 w= 8 nsites= 34 P= 1.0e+000
 0.063483 0.822365 0.038743 0.075408
 0.112766 0.884556 0.001625 0.001053
 0.112766 0.853825 0.016990 0.016418
 0.038171 0.922034 0.001625 0.038171
 0.995698 0.001625 0.001625 0.001053
 0.021052 0.939152 0.001625 0.038171
 0.001053 0.809960 0.038743 0.150245
 0.804126 0.177831 0.016990 0.001053

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Stopped because maximum number of motifs (5) reached.
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COMMAND:	streme --p ../result/final_prediction/K562/fasta/RankLinear5.0_60/POU5F1.fasta --oc ../result/final_prediction/K562/inference_raw/STREME/RankLinear5.0_60_POU5F1/ --w 8 --nmotifs 5 --verbosity 1
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CPU:		c17n10.farnam.hpc.yale.internal
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FINALTIME:	1.63 seconds
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