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STREME - Sensitive, Thorough, Rapid, Enriched Motif Elicitation
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MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800)

For further information on how to interpret these results please access https://meme-suite.org/meme.
To get a copy of the MEME Suite software please access https://meme-suite.org.

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REFERENCE
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If you use this program in your research, please cite:

Timothy L. Bailey,
"STREME: Accurate and versatile sequence motif discovery",
bioRxiv, (preprint), Nov. 23, 2020.
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ALPHABET= ACGT

strands: + -

Background letter frequencies
A 0.272 C 0.228 G 0.228 T 0.272 

MOTIF 1-AGATAAGR STREME-1
letter-probability matrix: alength= 4 w= 8 nsites= 159 P= 1.2e-001
 0.790206 0.044431 0.000393 0.164970
 0.000469 0.000393 0.998669 0.000469
 0.986788 0.012349 0.000393 0.000469
 0.012425 0.018865 0.000393 0.968317
 0.916519 0.000393 0.082618 0.000469
 0.868641 0.035340 0.076166 0.019853
 0.223104 0.178082 0.562280 0.036533
 0.308176 0.091458 0.599897 0.000469

MOTIF 2-AACCGCAA STREME-2
letter-probability matrix: alength= 4 w= 8 nsites= 13 P= 7.6e-001
 0.925596 0.002216 0.069547 0.002641
 0.858049 0.002216 0.002216 0.137520
 0.002641 0.992502 0.002216 0.002641
 0.002641 0.925171 0.002216 0.069972
 0.002641 0.137094 0.744376 0.115888
 0.002641 0.992502 0.002216 0.002641
 0.992927 0.002216 0.002216 0.002641
 0.722952 0.204860 0.069547 0.002641

MOTIF 3-CACTTCAG STREME-3
letter-probability matrix: alength= 4 w= 8 nsites= 14 P= 1.0e+000
 0.140078 0.786391 0.002257 0.071274
 0.992796 0.002257 0.002257 0.002690
 0.002690 0.992362 0.002257 0.002690
 0.002690 0.002257 0.002257 0.992796
 0.031082 0.002257 0.002257 0.964405
 0.209104 0.717365 0.002257 0.071274
 0.992796 0.002257 0.002257 0.002690
 0.140078 0.139644 0.649004 0.071274

MOTIF 4-CAKGCCAC STREME-4
letter-probability matrix: alength= 4 w= 8 nsites= 14 P= 1.0e+000
 0.003216 0.990869 0.002698 0.003216
 0.909393 0.002698 0.084692 0.003216
 0.003216 0.002698 0.661304 0.332781
 0.003216 0.002698 0.990869 0.003216
 0.003216 0.990869 0.002698 0.003216
 0.003216 0.908875 0.084692 0.003216
 0.909393 0.002698 0.084692 0.003216
 0.003216 0.990869 0.002698 0.003216

MOTIF 5-AAGTAATA STREME-5
letter-probability matrix: alength= 4 w= 8 nsites= 24 P= 1.0e+000
 0.987327 0.009588 0.001407 0.001678
 0.909829 0.001407 0.001407 0.087356
 0.087356 0.044178 0.823949 0.044517
 0.001678 0.130132 0.044247 0.823943
 0.952737 0.001407 0.001407 0.044448
 0.952737 0.044178 0.001407 0.001678
 0.130403 0.001407 0.130132 0.738057
 0.867058 0.087086 0.001407 0.044448

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Stopped because maximum number of motifs (5) reached.
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COMMAND:	streme --p ../result/final_prediction/K562/fasta/RankLinear5.0_60/PML.fasta --oc ../result/final_prediction/K562/inference_raw/STREME/RankLinear5.0_60_PML/ --w 8 --nmotifs 5 --verbosity 1
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CPU:		c23n03.farnam.hpc.yale.internal
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FINALTIME:	1.45 seconds
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