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STREME - Sensitive, Thorough, Rapid, Enriched Motif Elicitation
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MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800)

For further information on how to interpret these results please access https://meme-suite.org/meme.
To get a copy of the MEME Suite software please access https://meme-suite.org.

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REFERENCE
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If you use this program in your research, please cite:

Timothy L. Bailey,
"STREME: Accurate and versatile sequence motif discovery",
bioRxiv, (preprint), Nov. 23, 2020.
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ALPHABET= ACGT

strands: + -

Background letter frequencies
A 0.239 C 0.261 G 0.261 T 0.239 

MOTIF 1-GTCAMTCA STREME-1
letter-probability matrix: alength= 4 w= 8 nsites= 228 P= 3.6e-009
 0.007474 0.000213 0.992118 0.000195
 0.000195 0.166265 0.000213 0.833326
 0.000195 0.999396 0.000213 0.000195
 0.992510 0.000213 0.000213 0.007063
 0.505677 0.368996 0.111859 0.013468
 0.000195 0.000213 0.000213 0.999378
 0.000195 0.999396 0.000213 0.000195
 0.972769 0.000213 0.000213 0.026805

MOTIF 2-AACCAATC STREME-2
letter-probability matrix: alength= 4 w= 8 nsites= 33 P= 1.7e-001
 0.867400 0.001449 0.129826 0.001325
 0.802220 0.001449 0.001449 0.194881
 0.001325 0.979978 0.017371 0.001325
 0.001325 0.957438 0.001449 0.039787
 0.995776 0.001449 0.001449 0.001325
 0.957314 0.001449 0.001449 0.039787
 0.039787 0.039911 0.001449 0.918852
 0.039787 0.725797 0.078497 0.155919

MOTIF 3-CCDCCCAC STREME-3
letter-probability matrix: alength= 4 w= 8 nsites= 78 P= 3.6e-001
 0.105122 0.893511 0.000714 0.000653
 0.000653 0.997980 0.000714 0.000653
 0.304409 0.000714 0.372533 0.322344
 0.000653 0.997980 0.000714 0.000653
 0.000653 0.997980 0.000714 0.000653
 0.000653 0.814061 0.008561 0.176724
 0.602237 0.296154 0.000714 0.100895
 0.000653 0.997980 0.000714 0.000653

MOTIF 4-GCCTGTCA STREME-4
letter-probability matrix: alength= 4 w= 8 nsites= 24 P= 5.0e-001
 0.062553 0.002279 0.933086 0.002083
 0.002083 0.846867 0.002279 0.148771
 0.002083 0.933086 0.002279 0.062553
 0.002083 0.123412 0.002279 0.872226
 0.034665 0.002279 0.960973 0.002083
 0.002083 0.002279 0.002279 0.993359
 0.062553 0.872616 0.002279 0.062553
 0.993359 0.002279 0.002279 0.002083

MOTIF 5-AGGAGATG STREME-5
letter-probability matrix: alength= 4 w= 8 nsites= 40 P= 9.7e-001
 0.881542 0.001174 0.036111 0.081173
 0.032231 0.001174 0.965521 0.001073
 0.007033 0.063590 0.928304 0.001073
 0.890107 0.032332 0.014072 0.063489
 0.032231 0.001174 0.952623 0.013972
 0.727405 0.189637 0.076757 0.006201
 0.063792 0.063590 0.063690 0.808928
 0.157870 0.001174 0.839882 0.001073

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Stopped because maximum number of motifs (5) reached.
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COMMAND:	streme --p ../result/final_prediction/K562/fasta/RankLinear5.0_60/PKNOX1.fasta --oc ../result/final_prediction/K562/inference_raw/STREME/RankLinear5.0_60_PKNOX1/ --w 8 --nmotifs 5 --verbosity 1
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CPU:		c22n06.farnam.hpc.yale.internal
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FINALTIME:	1.69 seconds
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