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STREME - Sensitive, Thorough, Rapid, Enriched Motif Elicitation
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MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800)

For further information on how to interpret these results please access https://meme-suite.org/meme.
To get a copy of the MEME Suite software please access https://meme-suite.org.

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REFERENCE
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If you use this program in your research, please cite:

Timothy L. Bailey,
"STREME: Accurate and versatile sequence motif discovery",
bioRxiv, (preprint), Nov. 23, 2020.
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ALPHABET= ACGT

strands: + -

Background letter frequencies
A 0.159 C 0.341 G 0.341 T 0.159 

MOTIF 1-CTCGGCCT STREME-1
letter-probability matrix: alength= 4 w= 8 nsites= 70 P= 2.4e-002
 0.011394 0.960647 0.001282 0.026676
 0.002994 0.102828 0.040790 0.853388
 0.079083 0.836158 0.069539 0.015219
 0.004450 0.091877 0.876997 0.026676
 0.000599 0.001282 0.971443 0.026676
 0.026676 0.882106 0.064541 0.026676
 0.000599 0.931111 0.041571 0.026718
 0.007118 0.176285 0.015333 0.801264

MOTIF 2-CCCGCAGC STREME-2
letter-probability matrix: alength= 4 w= 8 nsites= 18 P= 5.0e-001
 0.001105 0.995426 0.002365 0.001105
 0.001105 0.995426 0.002365 0.001105
 0.001105 0.995426 0.002365 0.001105
 0.001105 0.002365 0.995426 0.001105
 0.001105 0.995426 0.002365 0.001105
 0.994166 0.002365 0.002365 0.001105
 0.033166 0.137636 0.731753 0.097445
 0.001105 0.704529 0.002365 0.292002

MOTIF 3-CCATGGCG STREME-3
letter-probability matrix: alength= 4 w= 8 nsites= 33 P= 5.0e-001
 0.001227 0.941482 0.056063 0.001227
 0.001227 0.888047 0.056063 0.054663
 0.863892 0.002627 0.132253 0.001227
 0.001227 0.002627 0.002627 0.993518
 0.001227 0.002627 0.994918 0.001227
 0.001227 0.018502 0.925608 0.054663
 0.001227 0.787502 0.102827 0.108443
 0.001227 0.056585 0.887525 0.054663

MOTIF 4-GCSGCSGC STREME-4
letter-probability matrix: alength= 4 w= 8 nsites= 43 P= 6.7e-001
 0.001537 0.003290 0.993637 0.001537
 0.001537 0.993637 0.003290 0.001537
 0.001537 0.411582 0.585345 0.001537
 0.001537 0.003290 0.993637 0.001537
 0.001537 0.993637 0.003290 0.001537
 0.001537 0.585345 0.411582 0.001537
 0.001537 0.003290 0.993637 0.001537
 0.001537 0.993637 0.003290 0.001537

MOTIF 5-CACTTACC STREME-5
letter-probability matrix: alength= 4 w= 8 nsites= 22 P= 1.0e+000
 0.000892 0.918651 0.040737 0.039720
 0.917634 0.001909 0.040737 0.039720
 0.039720 0.957479 0.001909 0.000892
 0.000892 0.040737 0.118769 0.839602
 0.000892 0.236768 0.001909 0.760431
 0.859267 0.040737 0.079690 0.020306
 0.000892 0.918651 0.040737 0.039720
 0.000892 0.957479 0.001909 0.039720

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Stopped because maximum number of motifs (5) reached.
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COMMAND:	streme --p ../result/final_prediction/K562/fasta/RankLinear5.0_60/PHF8.fasta --oc ../result/final_prediction/K562/inference_raw/STREME/RankLinear5.0_60_PHF8/ --w 8 --nmotifs 5 --verbosity 1
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CPU:		c22n04.farnam.hpc.yale.internal
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FINALTIME:	2.94 seconds
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