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STREME - Sensitive, Thorough, Rapid, Enriched Motif Elicitation
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MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800)

For further information on how to interpret these results please access https://meme-suite.org/meme.
To get a copy of the MEME Suite software please access https://meme-suite.org.

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REFERENCE
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If you use this program in your research, please cite:

Timothy L. Bailey,
"STREME: Accurate and versatile sequence motif discovery",
bioRxiv, (preprint), Nov. 23, 2020.
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ALPHABET= ACGT

strands: + -

Background letter frequencies
A 0.25 C 0.25 G 0.25 T 0.25 

MOTIF 1-AATCWCAG STREME-1
letter-probability matrix: alength= 4 w= 8 nsites= 94 P= 3.8e-004
 0.998233 0.000590 0.000590 0.000588
 0.998233 0.000590 0.000590 0.000588
 0.000588 0.033291 0.000590 0.965532
 0.000588 0.998235 0.000590 0.000588
 0.564150 0.000590 0.000590 0.434671
 0.031198 0.967624 0.000590 0.000588
 0.641514 0.000590 0.107492 0.250404
 0.000588 0.000590 0.998235 0.000588

MOTIF 2-GTGAGTCA STREME-2
letter-probability matrix: alength= 4 w= 8 nsites= 23 P= 2.4e-001
 0.199953 0.001775 0.747376 0.050896
 0.149625 0.001775 0.050981 0.797620
 0.050896 0.001775 0.945560 0.001769
 0.896270 0.001775 0.100186 0.001769
 0.050896 0.001775 0.896434 0.050896
 0.001769 0.001775 0.001775 0.994682
 0.001769 0.974350 0.001775 0.022106
 0.994682 0.001775 0.001775 0.001769

MOTIF 3-AAATCKGG STREME-3
letter-probability matrix: alength= 4 w= 8 nsites= 69 P= 3.0e-001
 0.694981 0.175472 0.128786 0.000761
 0.997712 0.000763 0.000763 0.000761
 0.997712 0.000763 0.000763 0.000761
 0.000761 0.000763 0.000763 0.997712
 0.000761 0.976584 0.021894 0.000761
 0.009600 0.021894 0.612665 0.355840
 0.000761 0.021894 0.976584 0.000761
 0.000761 0.000763 0.988967 0.009508

MOTIF 4-GAAATAAA STREME-4
letter-probability matrix: alength= 4 w= 8 nsites= 65 P= 6.5e-001
 0.165973 0.000793 0.713220 0.120014
 0.677087 0.000793 0.000793 0.321326
 0.909569 0.000793 0.066886 0.022751
 0.997623 0.000793 0.000793 0.000791
 0.000791 0.089060 0.000793 0.909356
 0.858362 0.014087 0.070456 0.057094
 0.714172 0.284243 0.000793 0.000791
 0.865507 0.000793 0.000793 0.132906

MOTIF 5-YAGAATAA STREME-5
letter-probability matrix: alength= 4 w= 8 nsites= 25 P= 8.8e-001
 0.002700 0.614631 0.002708 0.379961
 0.991884 0.002708 0.002708 0.002700
 0.002700 0.002708 0.916926 0.077666
 0.960850 0.002708 0.002708 0.033733
 0.916917 0.077675 0.002708 0.002700
 0.002700 0.002708 0.002708 0.991884
 0.991884 0.002708 0.002708 0.002700
 0.991884 0.002708 0.002708 0.002700

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Stopped because maximum number of motifs (5) reached.
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COMMAND:	streme --p ../result/final_prediction/K562/fasta/RankLinear5.0_60/PHF21A.fasta --oc ../result/final_prediction/K562/inference_raw/STREME/RankLinear5.0_60_PHF21A/ --w 8 --nmotifs 5 --verbosity 1
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CPU:		c22n10.farnam.hpc.yale.internal
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FINALTIME:	4.89 seconds
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