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STREME - Sensitive, Thorough, Rapid, Enriched Motif Elicitation
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MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800)

For further information on how to interpret these results please access https://meme-suite.org/meme.
To get a copy of the MEME Suite software please access https://meme-suite.org.

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REFERENCE
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If you use this program in your research, please cite:

Timothy L. Bailey,
"STREME: Accurate and versatile sequence motif discovery",
bioRxiv, (preprint), Nov. 23, 2020.
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ALPHABET= ACGT

strands: + -

Background letter frequencies
A 0.213 C 0.287 G 0.287 T 0.213 

MOTIF 1-CAGGAAGC STREME-1
letter-probability matrix: alength= 4 w= 8 nsites= 46 P= 9.5e-002
 0.016997 0.937388 0.044440 0.001175
 0.744487 0.135824 0.003294 0.116395
 0.039396 0.017405 0.877738 0.065461
 0.001175 0.011880 0.985771 0.001175
 0.957439 0.001583 0.001583 0.039396
 0.995660 0.001583 0.001583 0.001175
 0.054928 0.124407 0.798896 0.021769
 0.070713 0.713678 0.001583 0.214026

MOTIF 2-AGAGACGA STREME-2
letter-probability matrix: alength= 4 w= 8 nsites= 27 P= 5.0e-001
 0.786854 0.194434 0.017529 0.001183
 0.001183 0.001594 0.957547 0.039676
 0.902707 0.040087 0.017529 0.039676
 0.039676 0.040087 0.880560 0.039676
 0.843349 0.017529 0.022335 0.116787
 0.021924 0.820579 0.156314 0.001183
 0.039676 0.001594 0.957547 0.001183
 0.723545 0.001594 0.273679 0.001183

MOTIF 3-GCMSSKGC STREME-3
letter-probability matrix: alength= 4 w= 8 nsites= 65 P= 8.8e-001
 0.001392 0.001875 0.995341 0.001392
 0.001392 0.972695 0.001875 0.024038
 0.498125 0.431142 0.069342 0.001392
 0.056327 0.338278 0.604004 0.001392
 0.001392 0.604004 0.338278 0.056327
 0.001392 0.069342 0.431142 0.498125
 0.024038 0.001875 0.972695 0.001392
 0.001392 0.995341 0.001875 0.001392

MOTIF 4-ATCCTGGC STREME-4
letter-probability matrix: alength= 4 w= 8 nsites= 15 P= 1.0e+000
 0.928455 0.026091 0.026091 0.019364
 0.019364 0.026091 0.026091 0.928455
 0.019364 0.935182 0.026091 0.019364
 0.019364 0.935182 0.026091 0.019364
 0.019364 0.026091 0.026091 0.928455
 0.019364 0.026091 0.935182 0.019364
 0.019364 0.026091 0.935182 0.019364
 0.019364 0.935182 0.026091 0.019364

MOTIF 5-CGCGCTCC STREME-5
letter-probability matrix: alength= 4 w= 8 nsites= 14 P= 1.0e+000
 0.019364 0.935182 0.026091 0.019364
 0.019364 0.026091 0.935182 0.019364
 0.019364 0.935182 0.026091 0.019364
 0.019364 0.026091 0.935182 0.019364
 0.019364 0.935182 0.026091 0.019364
 0.019364 0.026091 0.026091 0.928455
 0.019364 0.935182 0.026091 0.019364
 0.019364 0.935182 0.026091 0.019364

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Stopped because maximum number of motifs (5) reached.
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COMMAND:	streme --p ../result/final_prediction/K562/fasta/RankLinear5.0_60/PHF20.fasta --oc ../result/final_prediction/K562/inference_raw/STREME/RankLinear5.0_60_PHF20/ --w 8 --nmotifs 5 --verbosity 1
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CPU:		c23n03.farnam.hpc.yale.internal
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FINALTIME:	1.35 seconds
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