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STREME - Sensitive, Thorough, Rapid, Enriched Motif Elicitation
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MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800)

For further information on how to interpret these results please access https://meme-suite.org/meme.
To get a copy of the MEME Suite software please access https://meme-suite.org.

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REFERENCE
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If you use this program in your research, please cite:

Timothy L. Bailey,
"STREME: Accurate and versatile sequence motif discovery",
bioRxiv, (preprint), Nov. 23, 2020.
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ALPHABET= ACGT

strands: + -

Background letter frequencies
A 0.265 C 0.235 G 0.235 T 0.265 

MOTIF 1-GWGATAAG STREME-1
letter-probability matrix: alength= 4 w= 8 nsites= 134 P= 1.1e-003
 0.084154 0.162662 0.638435 0.114748
 0.633769 0.000438 0.000438 0.365355
 0.000493 0.000438 0.998576 0.000493
 0.998631 0.000438 0.000438 0.000493
 0.000493 0.000438 0.000438 0.998631
 0.892350 0.000438 0.000438 0.106775
 0.743349 0.026293 0.229865 0.000493
 0.000493 0.328865 0.670149 0.000493

MOTIF 2-TAATCCCA STREME-2
letter-probability matrix: alength= 4 w= 8 nsites= 30 P= 7.0e-001
 0.001689 0.001499 0.001499 0.995313
 0.995313 0.001499 0.001499 0.001689
 0.862294 0.001499 0.134518 0.001689
 0.001689 0.001499 0.001499 0.995313
 0.001689 0.906586 0.090035 0.001689
 0.001689 0.995123 0.001499 0.001689
 0.001689 0.950926 0.001499 0.045886
 0.951116 0.001499 0.045696 0.001689

MOTIF 3-AATTAGCC STREME-3
letter-probability matrix: alength= 4 w= 8 nsites= 27 P= 7.6e-001
 0.862733 0.089935 0.001497 0.045835
 0.907023 0.045645 0.001497 0.045835
 0.001687 0.001497 0.001497 0.995318
 0.001687 0.001497 0.001497 0.995318
 0.906881 0.001497 0.001497 0.090124
 0.090124 0.045645 0.862543 0.001687
 0.045835 0.950981 0.001497 0.001687
 0.090124 0.799597 0.001497 0.108782

MOTIF 4-AAGCGATT STREME-4
letter-probability matrix: alength= 4 w= 8 nsites= 30 P= 1.0e+000
 0.977231 0.001485 0.019610 0.001673
 0.951572 0.001485 0.001485 0.045457
 0.001673 0.001485 0.995168 0.001673
 0.089383 0.610062 0.255098 0.045457
 0.089383 0.019610 0.845550 0.045457
 0.951572 0.001485 0.045269 0.001673
 0.001673 0.001485 0.001485 0.995357
 0.045457 0.001485 0.001485 0.951572

MOTIF 5-YGCCTCAG STREME-5
letter-probability matrix: alength= 4 w= 8 nsites= 24 P= 1.0e+000
 0.001450 0.610687 0.001287 0.386575
 0.001450 0.001287 0.995812 0.001450
 0.077357 0.729651 0.001287 0.191705
 0.001450 0.995812 0.001287 0.001450
 0.001450 0.268499 0.001287 0.728764
 0.001450 0.995812 0.001287 0.001450
 0.958022 0.001287 0.039240 0.001450
 0.306982 0.039240 0.652327 0.001450

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Stopped because maximum number of motifs (5) reached.
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COMMAND:	streme --p ../result/final_prediction/K562/fasta/RankLinear5.0_60/PHB2.fasta --oc ../result/final_prediction/K562/inference_raw/STREME/RankLinear5.0_60_PHB2/ --w 8 --nmotifs 5 --verbosity 1
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CPU:		c22n08.farnam.hpc.yale.internal
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FINALTIME:	3.25 seconds
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