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STREME - Sensitive, Thorough, Rapid, Enriched Motif Elicitation
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MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800)

For further information on how to interpret these results please access https://meme-suite.org/meme.
To get a copy of the MEME Suite software please access https://meme-suite.org.

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REFERENCE
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If you use this program in your research, please cite:

Timothy L. Bailey,
"STREME: Accurate and versatile sequence motif discovery",
bioRxiv, (preprint), Nov. 23, 2020.
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ALPHABET= ACGT

strands: + -

Background letter frequencies
A 0.298 C 0.202 G 0.202 T 0.298 

MOTIF 1-GGGAGGGA STREME-1
letter-probability matrix: alength= 4 w= 8 nsites= 73 P= 2.1e-001
 0.001722 0.001166 0.995390 0.001722
 0.001722 0.001166 0.995390 0.001722
 0.001722 0.001166 0.995390 0.001722
 0.995945 0.001166 0.001166 0.001722
 0.001722 0.001166 0.995390 0.001722
 0.001722 0.001166 0.995390 0.001722
 0.001722 0.001166 0.995390 0.001722
 0.995945 0.001166 0.001166 0.001722

MOTIF 2-AAATAAGK STREME-2
letter-probability matrix: alength= 4 w= 8 nsites= 15 P= 2.4e-001
 0.992627 0.002121 0.002121 0.003131
 0.992627 0.002121 0.002121 0.003131
 0.992627 0.002121 0.002121 0.003131
 0.003131 0.002121 0.002121 0.992627
 0.919820 0.074928 0.002121 0.003131
 0.700692 0.074928 0.002121 0.222259
 0.003131 0.002121 0.952387 0.042361
 0.003131 0.002121 0.625220 0.369528

MOTIF 3-GTCACTGM STREME-3
letter-probability matrix: alength= 4 w= 8 nsites= 112 P= 3.9e-001
 0.184133 0.000283 0.794786 0.020798
 0.000418 0.197248 0.065854 0.736480
 0.000418 0.832510 0.031314 0.135759
 0.758154 0.053020 0.029454 0.159372
 0.043353 0.568223 0.253392 0.135032
 0.172300 0.048901 0.048917 0.729882
 0.261501 0.039178 0.679441 0.019881
 0.248573 0.460302 0.123023 0.168102

MOTIF 4-AAAGAAAA STREME-4
letter-probability matrix: alength= 4 w= 8 nsites= 63 P= 5.0e-001
 0.994595 0.001555 0.001555 0.002295
 0.887682 0.001555 0.001555 0.109209
 0.994595 0.001555 0.001555 0.002295
 0.002295 0.001555 0.993855 0.002295
 0.694995 0.101633 0.001555 0.201817
 0.679383 0.093422 0.001555 0.225640
 0.994595 0.001555 0.001555 0.002295
 0.994595 0.001555 0.001555 0.002295

MOTIF 5-AACAAAAC STREME-5
letter-probability matrix: alength= 4 w= 8 nsites= 26 P= 1.0e+000
 0.895321 0.000980 0.000980 0.102718
 0.979573 0.004070 0.000980 0.015377
 0.001447 0.922177 0.000980 0.075396
 0.805078 0.102251 0.034629 0.058042
 0.962944 0.000980 0.000980 0.035096
 0.877408 0.102034 0.019110 0.001447
 0.940603 0.017804 0.014910 0.026684
 0.103106 0.763438 0.000980 0.132475

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Stopped because maximum number of motifs (5) reached.
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COMMAND:	streme --p ../result/final_prediction/K562/fasta/RankLinear5.0_60/PCBP2.fasta --oc ../result/final_prediction/K562/inference_raw/STREME/RankLinear5.0_60_PCBP2/ --w 8 --nmotifs 5 --verbosity 1
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CPU:		c22n10.farnam.hpc.yale.internal
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FINALTIME:	3.47 seconds
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