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STREME - Sensitive, Thorough, Rapid, Enriched Motif Elicitation
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MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800)

For further information on how to interpret these results please access https://meme-suite.org/meme.
To get a copy of the MEME Suite software please access https://meme-suite.org.

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REFERENCE
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If you use this program in your research, please cite:

Timothy L. Bailey,
"STREME: Accurate and versatile sequence motif discovery",
bioRxiv, (preprint), Nov. 23, 2020.
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ALPHABET= ACGT

strands: + -

Background letter frequencies
A 0.195 C 0.305 G 0.305 T 0.195 

MOTIF 1-AAWGAAAS STREME-1
letter-probability matrix: alength= 4 w= 8 nsites= 25 P= 3.0e-001
 0.994679 0.002015 0.002015 0.001291
 0.857024 0.002015 0.002015 0.138947
 0.654262 0.002015 0.002015 0.341708
 0.001291 0.002015 0.995402 0.001291
 0.792213 0.158645 0.002015 0.047127
 0.811188 0.002015 0.002015 0.184782
 0.994679 0.002015 0.002015 0.001291
 0.001291 0.664618 0.332799 0.001291

MOTIF 2-GGAGGGGA STREME-2
letter-probability matrix: alength= 4 w= 8 nsites= 62 P= 6.4e-001
 0.001021 0.001593 0.996366 0.001021
 0.001021 0.001593 0.985602 0.011785
 0.995794 0.001593 0.001593 0.001021
 0.001021 0.013670 0.801957 0.183353
 0.001021 0.001593 0.996366 0.001021
 0.001021 0.037824 0.960134 0.001021
 0.001021 0.001593 0.996366 0.001021
 0.995794 0.001593 0.001593 0.001021

MOTIF 3-CAGCWGCC STREME-3
letter-probability matrix: alength= 4 w= 8 nsites= 26 P= 7.6e-001
 0.001367 0.995133 0.002133 0.001367
 0.994368 0.002133 0.002133 0.001367
 0.049882 0.002133 0.800840 0.147145
 0.049882 0.946619 0.002133 0.001367
 0.371822 0.002133 0.002133 0.623912
 0.049882 0.002133 0.946619 0.001367
 0.001367 0.995133 0.002133 0.001367
 0.049882 0.751777 0.099475 0.098867

MOTIF 4-AAAAGTAG STREME-4
letter-probability matrix: alength= 4 w= 8 nsites= 16 P= 1.0e+000
 0.926428 0.002898 0.068817 0.001857
 0.926428 0.068817 0.002898 0.001857
 0.926428 0.068817 0.002898 0.001857
 0.794378 0.002898 0.134948 0.067777
 0.001857 0.002898 0.861337 0.133908
 0.001857 0.002898 0.002898 0.992347
 0.926428 0.002898 0.002898 0.067777
 0.067777 0.002898 0.861549 0.067777

MOTIF 5-AAGCCAAG STREME-5
letter-probability matrix: alength= 4 w= 8 nsites= 31 P= 1.0e+000
 0.776553 0.081898 0.006322 0.135227
 0.904950 0.012308 0.055108 0.027634
 0.108264 0.108688 0.755414 0.027634
 0.000757 0.905548 0.054935 0.038760
 0.054597 0.835871 0.054935 0.054597
 0.889157 0.028101 0.055108 0.027634
 0.862496 0.081812 0.028058 0.027634
 0.081647 0.108688 0.744028 0.065637

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Stopped because maximum number of motifs (5) reached.
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COMMAND:	streme --p ../result/final_prediction/K562/fasta/RankLinear5.0_60/PCBP1.fasta --oc ../result/final_prediction/K562/inference_raw/STREME/RankLinear5.0_60_PCBP1/ --w 8 --nmotifs 5 --verbosity 1
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CPU:		c22n06.farnam.hpc.yale.internal
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FINALTIME:	1.60 seconds
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