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STREME - Sensitive, Thorough, Rapid, Enriched Motif Elicitation
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MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800)

For further information on how to interpret these results please access https://meme-suite.org/meme.
To get a copy of the MEME Suite software please access https://meme-suite.org.

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REFERENCE
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If you use this program in your research, please cite:

Timothy L. Bailey,
"STREME: Accurate and versatile sequence motif discovery",
bioRxiv, (preprint), Nov. 23, 2020.
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ALPHABET= ACGT

strands: + -

Background letter frequencies
A 0.278 C 0.222 G 0.222 T 0.278 

MOTIF 1-ATAAATCA STREME-1
letter-probability matrix: alength= 4 w= 8 nsites= 163 P= 3.5e-005
 0.914771 0.011556 0.067408 0.006265
 0.000390 0.000310 0.000310 0.998990
 0.854034 0.068219 0.000310 0.077437
 0.966490 0.006780 0.010016 0.016714
 0.965719 0.019023 0.005163 0.010095
 0.002246 0.019752 0.006780 0.971221
 0.029647 0.872623 0.000310 0.097420
 0.831155 0.039463 0.000310 0.129072

MOTIF 2-TGCTGACA STREME-2
letter-probability matrix: alength= 4 w= 8 nsites= 95 P= 6.9e-002
 0.000735 0.008164 0.000585 0.990515
 0.031529 0.064413 0.848221 0.055837
 0.090226 0.687421 0.113651 0.108702
 0.014878 0.037261 0.000585 0.947276
 0.055837 0.002092 0.923027 0.019044
 0.941519 0.004087 0.018894 0.035500
 0.062284 0.907004 0.011669 0.019044
 0.924010 0.074173 0.000585 0.001231

MOTIF 3-CATTTGTC STREME-3
letter-probability matrix: alength= 4 w= 8 nsites= 32 P= 2.4e-001
 0.040322 0.949467 0.001239 0.008972
 0.918309 0.078895 0.001239 0.001557
 0.001557 0.001239 0.001239 0.995964
 0.079212 0.001239 0.001239 0.918309
 0.008972 0.001239 0.040005 0.949784
 0.293668 0.001239 0.703535 0.001557
 0.001557 0.017287 0.001239 0.979917
 0.040322 0.956881 0.001239 0.001557

MOTIF 4-CCTAGAGA STREME-4
letter-probability matrix: alength= 4 w= 8 nsites= 16 P= 1.0e+000
 0.002834 0.992075 0.002256 0.002834
 0.002834 0.992075 0.002256 0.002834
 0.002834 0.002256 0.072828 0.922082
 0.992653 0.002256 0.002256 0.002834
 0.002834 0.002256 0.992075 0.002834
 0.780712 0.072828 0.002256 0.144204
 0.215231 0.002256 0.779678 0.002834
 0.710141 0.143626 0.072828 0.073406

MOTIF 5-CCCAGAAG STREME-5
letter-probability matrix: alength= 4 w= 8 nsites= 23 P= 1.0e+000
 0.090197 0.858984 0.032148 0.018670
 0.001651 0.788492 0.001314 0.208543
 0.018670 0.937252 0.042426 0.001651
 0.913496 0.042426 0.042426 0.001651
 0.042763 0.042426 0.913159 0.001651
 0.932456 0.001314 0.023466 0.042763
 0.978701 0.001314 0.018333 0.001651
 0.042763 0.042426 0.896140 0.018670

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Stopped because maximum number of motifs (5) reached.
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COMMAND:	streme --p ../result/final_prediction/K562/fasta/RankLinear5.0_60/PBX2.fasta --oc ../result/final_prediction/K562/inference_raw/STREME/RankLinear5.0_60_PBX2/ --w 8 --nmotifs 5 --verbosity 1
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CPU:		c22n09.farnam.hpc.yale.internal
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FINALTIME:	1.61 seconds
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