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STREME - Sensitive, Thorough, Rapid, Enriched Motif Elicitation
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MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800)

For further information on how to interpret these results please access https://meme-suite.org/meme.
To get a copy of the MEME Suite software please access https://meme-suite.org.

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REFERENCE
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If you use this program in your research, please cite:

Timothy L. Bailey,
"STREME: Accurate and versatile sequence motif discovery",
bioRxiv, (preprint), Nov. 23, 2020.
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ALPHABET= ACGT

strands: + -

Background letter frequencies
A 0.272 C 0.228 G 0.228 T 0.272 

MOTIF 1-GTGAGCCA STREME-1
letter-probability matrix: alength= 4 w= 8 nsites= 21 P= 1.2e-001
 0.001991 0.001671 0.994347 0.001991
 0.001991 0.022689 0.001671 0.973649
 0.001991 0.001671 0.841544 0.154794
 0.943896 0.052442 0.001671 0.001991
 0.001991 0.001671 0.943330 0.053008
 0.001991 0.738850 0.001671 0.257488
 0.001991 0.994347 0.001671 0.001991
 0.943896 0.001671 0.052442 0.001991

MOTIF 2-CCTGGCCA STREME-2
letter-probability matrix: alength= 4 w= 8 nsites= 19 P= 2.4e-001
 0.002102 0.994030 0.001765 0.002102
 0.002102 0.616571 0.217606 0.163721
 0.002102 0.055378 0.023959 0.918561
 0.109501 0.055378 0.833019 0.002102
 0.002102 0.001765 0.994030 0.002102
 0.002102 0.994030 0.001765 0.002102
 0.002102 0.940331 0.001765 0.055802
 0.994368 0.001765 0.001765 0.002102

MOTIF 3-GGGATTAC STREME-3
letter-probability matrix: alength= 4 w= 8 nsites= 41 P= 7.0e-001
 0.000823 0.000691 0.955708 0.042779
 0.000823 0.000691 0.850548 0.147939
 0.072508 0.042647 0.791358 0.093486
 0.725701 0.167828 0.000691 0.105780
 0.000823 0.105784 0.000691 0.892703
 0.000823 0.000691 0.084603 0.913884
 0.737139 0.000691 0.261347 0.000823
 0.000823 0.860425 0.095973 0.042779

MOTIF 4-AGGCKGAG STREME-4
letter-probability matrix: alength= 4 w= 8 nsites= 20 P= 7.6e-001
 0.876942 0.096065 0.025143 0.001850
 0.001850 0.001553 0.947567 0.049030
 0.001850 0.048733 0.947567 0.001850
 0.001850 0.994747 0.001553 0.001850
 0.001850 0.143549 0.469748 0.384852
 0.001850 0.021084 0.975216 0.001850
 0.758840 0.143245 0.001553 0.096362
 0.001850 0.001553 0.994747 0.001850

MOTIF 5-GAGGTCAK STREME-5
letter-probability matrix: alength= 4 w= 8 nsites= 26 P= 1.0e+000
 0.098384 0.098081 0.801646 0.001889
 0.994939 0.001586 0.001586 0.001889
 0.001889 0.001586 0.946466 0.050059
 0.098384 0.001586 0.898141 0.001889
 0.001889 0.001586 0.001586 0.994939
 0.001889 0.898141 0.001586 0.098384
 0.946769 0.001586 0.001586 0.050059
 0.098384 0.049756 0.319479 0.532381

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Stopped because maximum number of motifs (5) reached.
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COMMAND:	streme --p ../result/final_prediction/K562/fasta/RankLinear5.0_60/NUFIP1.fasta --oc ../result/final_prediction/K562/inference_raw/STREME/RankLinear5.0_60_NUFIP1/ --w 8 --nmotifs 5 --verbosity 1
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CPU:		c22n06.farnam.hpc.yale.internal
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FINALTIME:	1.98 seconds
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