********************************************************************************
STREME - Sensitive, Thorough, Rapid, Enriched Motif Elicitation
********************************************************************************
MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800)

For further information on how to interpret these results please access https://meme-suite.org/meme.
To get a copy of the MEME Suite software please access https://meme-suite.org.

********************************************************************************


********************************************************************************
REFERENCE
********************************************************************************
If you use this program in your research, please cite:

Timothy L. Bailey,
"STREME: Accurate and versatile sequence motif discovery",
bioRxiv, (preprint), Nov. 23, 2020.
********************************************************************************


ALPHABET= ACGT

strands: + -

Background letter frequencies
A 0.166 C 0.334 G 0.334 T 0.166 

MOTIF 1-CATGCGCA STREME-1
letter-probability matrix: alength= 4 w= 8 nsites= 212 P= 2.6e-004
 0.013206 0.969855 0.013191 0.003748
 0.817843 0.047355 0.114083 0.020719
 0.032517 0.015760 0.098712 0.853010
 0.000154 0.000309 0.999384 0.000154
 0.000154 0.992648 0.001261 0.005938
 0.000939 0.010513 0.964596 0.023952
 0.000154 0.953851 0.000309 0.045686
 0.937582 0.031904 0.000309 0.030206

MOTIF 2-CCCCTCCC STREME-2
letter-probability matrix: alength= 4 w= 8 nsites= 90 P= 4.9e-002
 0.015016 0.964547 0.010282 0.010154
 0.035034 0.952191 0.012239 0.000536
 0.063341 0.904961 0.031162 0.000536
 0.012567 0.869781 0.113442 0.004211
 0.148672 0.006020 0.241522 0.603785
 0.022865 0.938334 0.005551 0.033250
 0.054702 0.941637 0.003125 0.000536
 0.012567 0.985144 0.001753 0.000536

MOTIF 3-TTAAAAAT STREME-3
letter-probability matrix: alength= 4 w= 8 nsites= 36 P= 5.0e-001
 0.053820 0.054505 0.054462 0.837213
 0.107088 0.081053 0.027871 0.783989
 0.757140 0.161083 0.081138 0.000638
 0.730678 0.001280 0.187631 0.080411
 0.693036 0.092318 0.054462 0.160184
 0.863847 0.054462 0.054462 0.027229
 0.757312 0.160997 0.054462 0.027229
 0.081059 0.107729 0.038879 0.772334

MOTIF 4-GCCCCGCC STREME-4
letter-probability matrix: alength= 4 w= 8 nsites= 63 P= 5.0e-001
 0.053100 0.032624 0.873518 0.040757
 0.152668 0.756955 0.058503 0.031874
 0.054379 0.922515 0.001498 0.021608
 0.066739 0.917996 0.001498 0.013767
 0.069153 0.916048 0.014051 0.000747
 0.035649 0.001725 0.961878 0.000747
 0.000747 0.956634 0.032624 0.009994
 0.000747 0.932693 0.055720 0.010840

MOTIF 5-ACGACGMS STREME-5
letter-probability matrix: alength= 4 w= 8 nsites= 57 P= 9.5e-001
 0.816640 0.026271 0.017351 0.139739
 0.000397 0.932138 0.067067 0.000397
 0.232452 0.169021 0.548413 0.050114
 0.865494 0.000797 0.000797 0.132912
 0.000397 0.900357 0.058886 0.040359
 0.149440 0.156799 0.627147 0.066615
 0.512600 0.318251 0.135643 0.033506
 0.113590 0.516148 0.320149 0.050114

********************************************************************************
Stopped because maximum number of motifs (5) reached.
********************************************************************************
COMMAND:	streme --p ../result/final_prediction/K562/fasta/RankLinear5.0_60/NRF1.fasta --oc ../result/final_prediction/K562/inference_raw/STREME/RankLinear5.0_60_NRF1/ --w 8 --nmotifs 5 --verbosity 1
********************************************************************************
CPU:		c17n09.farnam.hpc.yale.internal
********************************************************************************
FINALTIME:	1.58 seconds
********************************************************************************