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STREME - Sensitive, Thorough, Rapid, Enriched Motif Elicitation
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MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800)

For further information on how to interpret these results please access https://meme-suite.org/meme.
To get a copy of the MEME Suite software please access https://meme-suite.org.

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REFERENCE
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If you use this program in your research, please cite:

Timothy L. Bailey,
"STREME: Accurate and versatile sequence motif discovery",
bioRxiv, (preprint), Nov. 23, 2020.
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ALPHABET= ACGT

strands: + -

Background letter frequencies
A 0.259 C 0.241 G 0.241 T 0.259 

MOTIF 1-RACTCCAT STREME-1
letter-probability matrix: alength= 4 w= 8 nsites= 100 P= 2.5e-002
 0.337620 0.021401 0.617970 0.023009
 0.998877 0.000366 0.000366 0.000392
 0.000392 0.998851 0.000366 0.000392
 0.053100 0.019471 0.000366 0.927063
 0.000392 0.998851 0.000366 0.000392
 0.000392 0.998851 0.000366 0.000392
 0.977875 0.000366 0.021368 0.000392
 0.000392 0.000366 0.000366 0.998877

MOTIF 2-CTATTCAA STREME-2
letter-probability matrix: alength= 4 w= 8 nsites= 38 P= 1.2e-001
 0.001037 0.829051 0.028765 0.141147
 0.001037 0.000968 0.000968 0.997027
 0.997027 0.000968 0.000968 0.001037
 0.028833 0.056650 0.000968 0.913548
 0.001037 0.000968 0.000968 0.997027
 0.001037 0.913300 0.000968 0.084695
 0.969230 0.000968 0.000968 0.028833
 0.997027 0.000968 0.000968 0.001037

MOTIF 3-AACCAGAG STREME-3
letter-probability matrix: alength= 4 w= 8 nsites= 32 P= 1.2e-001
 0.932600 0.021945 0.021945 0.023509
 0.932600 0.021945 0.021945 0.023509
 0.023509 0.931036 0.021945 0.023509
 0.023509 0.931036 0.021945 0.023509
 0.932600 0.021945 0.021945 0.023509
 0.023509 0.021945 0.931036 0.023509
 0.932600 0.021945 0.021945 0.023509
 0.023509 0.021945 0.931036 0.023509

MOTIF 4-GGGCTGCA STREME-4
letter-probability matrix: alength= 4 w= 8 nsites= 38 P= 2.4e-001
 0.001189 0.014306 0.983315 0.001189
 0.001189 0.032987 0.900777 0.065046
 0.033066 0.001110 0.964634 0.001189
 0.033118 0.910967 0.001110 0.054805
 0.001189 0.001110 0.032987 0.964713
 0.001189 0.001110 0.964634 0.033066
 0.001189 0.932654 0.001110 0.065046
 0.932734 0.001110 0.064967 0.001189

MOTIF 5-GGGTAACA STREME-5
letter-probability matrix: alength= 4 w= 8 nsites= 43 P= 6.7e-001
 0.023509 0.021945 0.931036 0.023509
 0.023509 0.021945 0.931036 0.023509
 0.023509 0.021945 0.931036 0.023509
 0.023509 0.021945 0.021945 0.932600
 0.932600 0.021945 0.021945 0.023509
 0.932600 0.021945 0.021945 0.023509
 0.023509 0.931036 0.021945 0.023509
 0.932600 0.021945 0.021945 0.023509

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Stopped because maximum number of motifs (5) reached.
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COMMAND:	streme --p ../result/final_prediction/K562/fasta/RankLinear5.0_60/NR4A1.fasta --oc ../result/final_prediction/K562/inference_raw/STREME/RankLinear5.0_60_NR4A1/ --w 8 --nmotifs 5 --verbosity 1
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CPU:		c17n10.farnam.hpc.yale.internal
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FINALTIME:	1.57 seconds
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