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STREME - Sensitive, Thorough, Rapid, Enriched Motif Elicitation
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MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800)

For further information on how to interpret these results please access https://meme-suite.org/meme.
To get a copy of the MEME Suite software please access https://meme-suite.org.

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REFERENCE
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If you use this program in your research, please cite:

Timothy L. Bailey,
"STREME: Accurate and versatile sequence motif discovery",
bioRxiv, (preprint), Nov. 23, 2020.
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ALPHABET= ACGT

strands: + -

Background letter frequencies
A 0.264 C 0.236 G 0.236 T 0.264 

MOTIF 1-ARAGGTCA STREME-1
letter-probability matrix: alength= 4 w= 8 nsites= 214 P= 2.3e-002
 0.808644 0.042730 0.083471 0.065156
 0.504909 0.000257 0.486991 0.007843
 0.999198 0.000257 0.000257 0.000288
 0.000288 0.000257 0.963784 0.035671
 0.000288 0.000257 0.999167 0.000288
 0.000288 0.037773 0.075985 0.885954
 0.000288 0.910123 0.000257 0.089332
 0.965722 0.015496 0.018494 0.000288

MOTIF 2-AAAGATHA STREME-2
letter-probability matrix: alength= 4 w= 8 nsites= 23 P= 5.0e-001
 0.994494 0.001765 0.001765 0.001976
 0.973026 0.001765 0.001765 0.023444
 0.994494 0.001765 0.001765 0.001976
 0.001976 0.001765 0.764878 0.231381
 0.994494 0.001765 0.001765 0.001976
 0.001976 0.001765 0.001765 0.994494
 0.324703 0.389788 0.001765 0.283744
 0.994494 0.001765 0.001765 0.001976

MOTIF 3-AGATAAGG STREME-3
letter-probability matrix: alength= 4 w= 8 nsites= 50 P= 7.0e-001
 0.724997 0.067205 0.004975 0.202824
 0.009982 0.000751 0.988426 0.000841
 0.993433 0.000751 0.004975 0.000841
 0.000841 0.000751 0.000751 0.997656
 0.988515 0.000751 0.000751 0.009982
 0.894589 0.000751 0.015070 0.089590
 0.034955 0.000751 0.896999 0.067295
 0.317661 0.008860 0.663497 0.009982

MOTIF 4-AGAATAGT STREME-4
letter-probability matrix: alength= 4 w= 8 nsites= 21 P= 7.0e-001
 0.937081 0.058816 0.001936 0.002167
 0.116111 0.001936 0.879786 0.002167
 0.880018 0.001936 0.115879 0.002167
 0.913534 0.058816 0.001936 0.025714
 0.002167 0.001936 0.001936 0.993961
 0.709009 0.058816 0.058816 0.173358
 0.002167 0.058816 0.936849 0.002167
 0.059048 0.115879 0.058816 0.766257

MOTIF 5-WAACCACA STREME-5
letter-probability matrix: alength= 4 w= 8 nsites= 30 P= 1.0e+000
 0.328758 0.021529 0.053567 0.596147
 0.883451 0.042349 0.052588 0.021613
 0.829031 0.021529 0.148647 0.000793
 0.000793 0.997705 0.000709 0.000793
 0.000793 0.778840 0.021529 0.198838
 0.882298 0.044874 0.021529 0.051299
 0.000793 0.775837 0.097522 0.125847
 0.932804 0.000709 0.065694 0.000793

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Stopped because maximum number of motifs (5) reached.
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COMMAND:	streme --p ../result/final_prediction/K562/fasta/RankLinear5.0_60/NR2F6.fasta --oc ../result/final_prediction/K562/inference_raw/STREME/RankLinear5.0_60_NR2F6/ --w 8 --nmotifs 5 --verbosity 1
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CPU:		c23n01.farnam.hpc.yale.internal
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FINALTIME:	1.72 seconds
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