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STREME - Sensitive, Thorough, Rapid, Enriched Motif Elicitation
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MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800)

For further information on how to interpret these results please access https://meme-suite.org/meme.
To get a copy of the MEME Suite software please access https://meme-suite.org.

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REFERENCE
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If you use this program in your research, please cite:

Timothy L. Bailey,
"STREME: Accurate and versatile sequence motif discovery",
bioRxiv, (preprint), Nov. 23, 2020.
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ALPHABET= ACGT

strands: + -

Background letter frequencies
A 0.256 C 0.244 G 0.244 T 0.256 

MOTIF 1-RAGGTCAA STREME-1
letter-probability matrix: alength= 4 w= 8 nsites= 209 P= 8.3e-005
 0.385545 0.014533 0.537147 0.062776
 0.820725 0.008840 0.170120 0.000315
 0.000315 0.000301 0.999069 0.000315
 0.016672 0.000301 0.950455 0.032571
 0.000315 0.025745 0.095146 0.878794
 0.004585 0.876099 0.000301 0.119015
 0.999083 0.000301 0.000301 0.000315
 0.514436 0.246808 0.114530 0.124226

MOTIF 2-AGATAARR STREME-2
letter-probability matrix: alength= 4 w= 8 nsites= 131 P= 3.1e-002
 0.611019 0.097105 0.044810 0.247066
 0.000444 0.000424 0.998687 0.000444
 0.998707 0.000424 0.000424 0.000444
 0.000444 0.000424 0.000424 0.998707
 0.946400 0.000424 0.000424 0.052751
 0.950503 0.048628 0.000424 0.000444
 0.264305 0.167916 0.518936 0.048843
 0.502521 0.142497 0.354538 0.000444

MOTIF 3-CCACARAG STREME-3
letter-probability matrix: alength= 4 w= 8 nsites= 32 P= 5.0e-001
 0.001779 0.994744 0.001698 0.001779
 0.001779 0.946545 0.001698 0.049978
 0.801874 0.001698 0.194649 0.001779
 0.001779 0.994744 0.001698 0.001779
 0.850228 0.001698 0.146295 0.001779
 0.342279 0.001698 0.509492 0.146531
 0.994825 0.001698 0.001698 0.001779
 0.001779 0.001698 0.994744 0.001779

MOTIF 4-AACAKATG STREME-4
letter-probability matrix: alength= 4 w= 8 nsites= 21 P= 7.0e-001
 0.882250 0.001967 0.001967 0.113816
 0.994005 0.001967 0.001967 0.002060
 0.002060 0.993912 0.001967 0.002060
 0.994005 0.001967 0.001967 0.002060
 0.169739 0.001967 0.546440 0.281854
 0.826327 0.001967 0.001967 0.169739
 0.002060 0.113633 0.001967 0.882340
 0.002060 0.001967 0.993912 0.002060

MOTIF 5-MCTCCAGC STREME-5
letter-probability matrix: alength= 4 w= 8 nsites= 18 P= 1.0e+000
 0.333096 0.662164 0.002315 0.002425
 0.002425 0.927127 0.068024 0.002425
 0.002425 0.002315 0.002315 0.992945
 0.002425 0.992835 0.002315 0.002425
 0.002425 0.927127 0.002315 0.068134
 0.992945 0.002315 0.002315 0.002425
 0.200186 0.002315 0.795074 0.002425
 0.002425 0.992835 0.002315 0.002425

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Stopped because maximum number of motifs (5) reached.
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COMMAND:	streme --p ../result/final_prediction/K562/fasta/RankLinear5.0_60/NR2F2.fasta --oc ../result/final_prediction/K562/inference_raw/STREME/RankLinear5.0_60_NR2F2/ --w 8 --nmotifs 5 --verbosity 1
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CPU:		c22n11.farnam.hpc.yale.internal
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FINALTIME:	2.58 seconds
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