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STREME - Sensitive, Thorough, Rapid, Enriched Motif Elicitation
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MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800)

For further information on how to interpret these results please access https://meme-suite.org/meme.
To get a copy of the MEME Suite software please access https://meme-suite.org.

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REFERENCE
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If you use this program in your research, please cite:

Timothy L. Bailey,
"STREME: Accurate and versatile sequence motif discovery",
bioRxiv, (preprint), Nov. 23, 2020.
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ALPHABET= ACGT

strands: + -

Background letter frequencies
A 0.251 C 0.249 G 0.249 T 0.251 

MOTIF 1-ARAGGTCA STREME-1
letter-probability matrix: alength= 4 w= 8 nsites= 221 P= 1.8e-007
 0.646350 0.060054 0.203577 0.090020
 0.419890 0.005754 0.531878 0.042479
 0.962706 0.000268 0.036755 0.000271
 0.003363 0.000268 0.996098 0.000271
 0.000271 0.000268 0.998505 0.000956
 0.000271 0.024926 0.041145 0.933659
 0.000271 0.946614 0.000268 0.052847
 0.973002 0.000268 0.026460 0.000271

MOTIF 2-AGAGATAA STREME-2
letter-probability matrix: alength= 4 w= 8 nsites= 24 P= 1.2e-001
 0.931918 0.022627 0.022627 0.022827
 0.022827 0.022627 0.931718 0.022827
 0.931918 0.022627 0.022627 0.022827
 0.022827 0.022627 0.931718 0.022827
 0.931918 0.022627 0.022627 0.022827
 0.022827 0.022627 0.022627 0.931918
 0.931918 0.022627 0.022627 0.022827
 0.931918 0.022627 0.022627 0.022827

MOTIF 3-AATCCCAG STREME-3
letter-probability matrix: alength= 4 w= 8 nsites= 44 P= 5.0e-001
 0.904667 0.060418 0.001169 0.033745
 0.931245 0.001169 0.001169 0.066416
 0.001180 0.055943 0.001169 0.941708
 0.001180 0.996471 0.001169 0.001180
 0.099192 0.800447 0.001169 0.099192
 0.001180 0.898459 0.001169 0.099192
 0.882104 0.001169 0.001169 0.115557
 0.080178 0.033735 0.884907 0.001180

MOTIF 4-CCAAGGGA STREME-4
letter-probability matrix: alength= 4 w= 8 nsites= 13 P= 7.6e-001
 0.022827 0.931718 0.022627 0.022827
 0.022827 0.931718 0.022627 0.022827
 0.931918 0.022627 0.022627 0.022827
 0.931918 0.022627 0.022627 0.022827
 0.022827 0.022627 0.931718 0.022827
 0.022827 0.022627 0.931718 0.022827
 0.022827 0.022627 0.931718 0.022827
 0.931918 0.022627 0.022627 0.022827

MOTIF 5-ACCCCAGA STREME-5
letter-probability matrix: alength= 4 w= 8 nsites= 19 P= 9.5e-001
 0.993732 0.002083 0.002083 0.002102
 0.002102 0.993713 0.002083 0.002102
 0.002102 0.935698 0.002083 0.060117
 0.002102 0.993713 0.002083 0.002102
 0.060117 0.877683 0.002083 0.060117
 0.935716 0.002083 0.060099 0.002102
 0.002102 0.176973 0.818824 0.002102
 0.819124 0.176691 0.002083 0.002102

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Stopped because maximum number of motifs (5) reached.
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COMMAND:	streme --p ../result/final_prediction/K562/fasta/RankLinear5.0_60/NR2F1.fasta --oc ../result/final_prediction/K562/inference_raw/STREME/RankLinear5.0_60_NR2F1/ --w 8 --nmotifs 5 --verbosity 1
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CPU:		c23n03.farnam.hpc.yale.internal
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FINALTIME:	1.67 seconds
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