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STREME - Sensitive, Thorough, Rapid, Enriched Motif Elicitation
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MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800)

For further information on how to interpret these results please access https://meme-suite.org/meme.
To get a copy of the MEME Suite software please access https://meme-suite.org.

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REFERENCE
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If you use this program in your research, please cite:

Timothy L. Bailey,
"STREME: Accurate and versatile sequence motif discovery",
bioRxiv, (preprint), Nov. 23, 2020.
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ALPHABET= ACGT

strands: + -

Background letter frequencies
A 0.215 C 0.285 G 0.285 T 0.215 

MOTIF 1-AATCRATC STREME-1
letter-probability matrix: alength= 4 w= 8 nsites= 42 P= 2.5e-002
 0.898448 0.068324 0.023280 0.009949
 0.908029 0.045639 0.023280 0.023052
 0.000693 0.045639 0.103121 0.850547
 0.000693 0.975335 0.000920 0.023052
 0.575542 0.032536 0.346510 0.045412
 0.975107 0.000920 0.023280 0.000693
 0.023052 0.068324 0.113334 0.795290
 0.090203 0.796315 0.045639 0.067843

MOTIF 2-CTGTGACC STREME-2
letter-probability matrix: alength= 4 w= 8 nsites= 90 P= 1.1e-001
 0.019518 0.935027 0.025936 0.019518
 0.019518 0.025936 0.025936 0.928609
 0.019518 0.025936 0.935027 0.019518
 0.019518 0.025936 0.025936 0.928609
 0.019518 0.025936 0.935027 0.019518
 0.928609 0.025936 0.025936 0.019518
 0.019518 0.935027 0.025936 0.019518
 0.019518 0.935027 0.025936 0.019518

MOTIF 3-AAGTAGAA STREME-3
letter-probability matrix: alength= 4 w= 8 nsites= 15 P= 5.0e-001
 0.864393 0.002641 0.066809 0.066156
 0.992730 0.002641 0.002641 0.001988
 0.001988 0.002641 0.864841 0.130531
 0.001988 0.002641 0.002641 0.992730
 0.799604 0.002641 0.002641 0.195113
 0.066156 0.066809 0.865047 0.001988
 0.773455 0.066809 0.029205 0.130531
 0.992730 0.002641 0.002641 0.001988

MOTIF 4-CCGGATGT STREME-4
letter-probability matrix: alength= 4 w= 8 nsites= 21 P= 7.6e-001
 0.019518 0.935027 0.025936 0.019518
 0.019518 0.935027 0.025936 0.019518
 0.019518 0.025936 0.935027 0.019518
 0.019518 0.025936 0.935027 0.019518
 0.928609 0.025936 0.025936 0.019518
 0.019518 0.025936 0.025936 0.928609
 0.019518 0.025936 0.935027 0.019518
 0.019518 0.025936 0.025936 0.928609

MOTIF 5-GGCAGACA STREME-5
letter-probability matrix: alength= 4 w= 8 nsites= 27 P= 8.8e-001
 0.001428 0.001897 0.995248 0.001428
 0.001428 0.001897 0.995248 0.001428
 0.001428 0.995248 0.001897 0.001428
 0.948688 0.047988 0.001897 0.001428
 0.001428 0.001897 0.902918 0.093757
 0.994778 0.001897 0.001897 0.001428
 0.001428 0.995248 0.001897 0.001428
 0.882971 0.001897 0.113704 0.001428

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Stopped because maximum number of motifs (5) reached.
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COMMAND:	streme --p ../result/final_prediction/K562/fasta/RankLinear5.0_60/NR2C2.fasta --oc ../result/final_prediction/K562/inference_raw/STREME/RankLinear5.0_60_NR2C2/ --w 8 --nmotifs 5 --verbosity 1
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CPU:		c17n09.farnam.hpc.yale.internal
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FINALTIME:	3.21 seconds
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