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STREME - Sensitive, Thorough, Rapid, Enriched Motif Elicitation
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MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800)

For further information on how to interpret these results please access https://meme-suite.org/meme.
To get a copy of the MEME Suite software please access https://meme-suite.org.

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REFERENCE
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If you use this program in your research, please cite:

Timothy L. Bailey,
"STREME: Accurate and versatile sequence motif discovery",
bioRxiv, (preprint), Nov. 23, 2020.
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ALPHABET= ACGT

strands: + -

Background letter frequencies
A 0.228 C 0.272 G 0.272 T 0.228 

MOTIF 1-CTTTGACC STREME-1
letter-probability matrix: alength= 4 w= 8 nsites= 123 P= 1.3e-002
 0.000416 0.970817 0.014671 0.014097
 0.001576 0.010767 0.025799 0.961857
 0.054080 0.200272 0.090757 0.654891
 0.000416 0.025799 0.000496 0.973289
 0.023090 0.054443 0.922052 0.000416
 0.876958 0.073147 0.021758 0.028136
 0.103697 0.864725 0.000496 0.031081
 0.008843 0.967070 0.013137 0.010950

MOTIF 2-CTTCCGGG STREME-2
letter-probability matrix: alength= 4 w= 8 nsites= 57 P= 1.2e-001
 0.011799 0.986297 0.001037 0.000868
 0.000868 0.001037 0.001037 0.997059
 0.000868 0.001037 0.001037 0.997059
 0.000868 0.997227 0.001037 0.000868
 0.000868 0.997227 0.001037 0.000868
 0.125352 0.053930 0.819850 0.000868
 0.027272 0.001037 0.918015 0.053676
 0.000868 0.001037 0.997227 0.000868

MOTIF 3-AACCACAA STREME-3
letter-probability matrix: alength= 4 w= 8 nsites= 45 P= 3.5e-001
 0.894299 0.010586 0.024274 0.070840
 0.870792 0.000917 0.000917 0.127375
 0.116452 0.778689 0.104091 0.000768
 0.051950 0.646587 0.047632 0.253831
 0.734389 0.067247 0.197596 0.000768
 0.000768 0.904117 0.000917 0.094198
 0.787031 0.141137 0.071064 0.000768
 0.693002 0.000917 0.104242 0.201839

MOTIF 4-AAAGRTGA STREME-4
letter-probability matrix: alength= 4 w= 8 nsites= 38 P= 5.0e-001
 0.710494 0.286881 0.001429 0.001197
 0.798784 0.001429 0.001429 0.198359
 0.959550 0.037824 0.001429 0.001197
 0.219805 0.074220 0.704778 0.001197
 0.432623 0.001429 0.564752 0.001197
 0.001197 0.001429 0.001429 0.995946
 0.001197 0.001429 0.886874 0.110501
 0.995946 0.001429 0.001429 0.001197

MOTIF 5-GATGAAAG STREME-5
letter-probability matrix: alength= 4 w= 8 nsites= 12 P= 5.0e-001
 0.097767 0.003716 0.856221 0.042296
 0.989456 0.003716 0.003716 0.003112
 0.003112 0.003716 0.003716 0.989456
 0.097767 0.003716 0.895405 0.003112
 0.705187 0.003716 0.098371 0.192727
 0.989456 0.003716 0.003716 0.003112
 0.894801 0.098371 0.003716 0.003112
 0.097767 0.003716 0.800750 0.097767

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Stopped because maximum number of motifs (5) reached.
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COMMAND:	streme --p ../result/final_prediction/K562/fasta/RankLinear5.0_60/NR2C1.fasta --oc ../result/final_prediction/K562/inference_raw/STREME/RankLinear5.0_60_NR2C1/ --w 8 --nmotifs 5 --verbosity 1
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CPU:		c22n04.farnam.hpc.yale.internal
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FINALTIME:	3.19 seconds
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