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STREME - Sensitive, Thorough, Rapid, Enriched Motif Elicitation
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MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800)

For further information on how to interpret these results please access https://meme-suite.org/meme.
To get a copy of the MEME Suite software please access https://meme-suite.org.

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REFERENCE
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If you use this program in your research, please cite:

Timothy L. Bailey,
"STREME: Accurate and versatile sequence motif discovery",
bioRxiv, (preprint), Nov. 23, 2020.
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ALPHABET= ACGT

strands: + -

Background letter frequencies
A 0.33 C 0.17 G 0.17 T 0.33 

MOTIF 1-TTTAAAAA STREME-1
letter-probability matrix: alength= 4 w= 8 nsites= 49 P= 5.0e-001
 0.029964 0.015491 0.015491 0.939055
 0.029964 0.015491 0.015491 0.939055
 0.029964 0.015491 0.015491 0.939055
 0.939055 0.015491 0.015491 0.029964
 0.939055 0.015491 0.015491 0.029964
 0.939055 0.015491 0.015491 0.029964
 0.939055 0.015491 0.015491 0.029964
 0.939055 0.015491 0.015491 0.029964

MOTIF 2-AAGACATA STREME-2
letter-probability matrix: alength= 4 w= 8 nsites= 40 P= 7.6e-001
 0.922898 0.073975 0.001066 0.002061
 0.922898 0.001066 0.001066 0.074971
 0.113205 0.001066 0.883668 0.002061
 0.890652 0.106221 0.001066 0.002061
 0.002061 0.889657 0.001066 0.107216
 0.908972 0.087902 0.001066 0.002061
 0.002061 0.001066 0.044414 0.952459
 0.817663 0.044414 0.024422 0.113501

MOTIF 3-ACTGTATA STREME-3
letter-probability matrix: alength= 4 w= 8 nsites= 20 P= 8.8e-001
 0.939055 0.015491 0.015491 0.029964
 0.029964 0.924582 0.015491 0.029964
 0.029964 0.015491 0.015491 0.939055
 0.029964 0.015491 0.924582 0.029964
 0.029964 0.015491 0.015491 0.939055
 0.939055 0.015491 0.015491 0.029964
 0.029964 0.015491 0.015491 0.939055
 0.939055 0.015491 0.015491 0.029964

MOTIF 4-WCCCTCTC STREME-4
letter-probability matrix: alength= 4 w= 8 nsites= 24 P= 8.8e-001
 0.444454 0.218823 0.001207 0.335517
 0.100531 0.846830 0.001207 0.051433
 0.002335 0.994124 0.001207 0.002335
 0.002335 0.945026 0.001207 0.051433
 0.002335 0.001207 0.001207 0.995251
 0.060903 0.935556 0.001207 0.002335
 0.100689 0.176344 0.050305 0.672662
 0.051433 0.945026 0.001207 0.002335

MOTIF 5-AATGGGAA STREME-5
letter-probability matrix: alength= 4 w= 8 nsites= 24 P= 9.5e-001
 0.904672 0.001023 0.084369 0.009936
 0.895406 0.084369 0.001023 0.019202
 0.001978 0.001023 0.001023 0.995976
 0.001978 0.001023 0.953414 0.043585
 0.001978 0.001023 0.995020 0.001978
 0.001978 0.126244 0.828193 0.043585
 0.578030 0.126244 0.210401 0.085325
 0.890212 0.001023 0.084369 0.024396

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Stopped because maximum number of motifs (5) reached.
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COMMAND:	streme --p ../result/final_prediction/K562/fasta/RankLinear5.0_60/NR0B1.fasta --oc ../result/final_prediction/K562/inference_raw/STREME/RankLinear5.0_60_NR0B1/ --w 8 --nmotifs 5 --verbosity 1
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CPU:		c17n10.farnam.hpc.yale.internal
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FINALTIME:	1.50 seconds
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