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STREME - Sensitive, Thorough, Rapid, Enriched Motif Elicitation
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MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800)

For further information on how to interpret these results please access https://meme-suite.org/meme.
To get a copy of the MEME Suite software please access https://meme-suite.org.

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REFERENCE
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If you use this program in your research, please cite:

Timothy L. Bailey,
"STREME: Accurate and versatile sequence motif discovery",
bioRxiv, (preprint), Nov. 23, 2020.
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ALPHABET= ACGT

strands: + -

Background letter frequencies
A 0.147 C 0.353 G 0.353 T 0.147 

MOTIF 1-ACTCACCC STREME-1
letter-probability matrix: alength= 4 w= 8 nsites= 52 P= 3.3e-001
 0.910678 0.030059 0.030059 0.029205
 0.057806 0.882930 0.058659 0.000605
 0.000605 0.013298 0.127791 0.858306
 0.029205 0.768391 0.058659 0.143745
 0.947542 0.009955 0.013298 0.029205
 0.012445 0.985492 0.001458 0.000605
 0.029205 0.911485 0.058705 0.000605
 0.081485 0.639544 0.135364 0.143607

MOTIF 2-CGGGGACG STREME-2
letter-probability matrix: alength= 4 w= 8 nsites= 79 P= 3.5e-001
 0.000536 0.997637 0.001291 0.000536
 0.169678 0.038402 0.755569 0.036351
 0.269203 0.001291 0.728970 0.000536
 0.011021 0.109549 0.878894 0.000536
 0.025906 0.056322 0.917236 0.000536
 0.859408 0.001291 0.001291 0.138010
 0.202571 0.795602 0.001291 0.000536
 0.065575 0.001291 0.932598 0.000536

MOTIF 3-CGCAGCCC STREME-3
letter-probability matrix: alength= 4 w= 8 nsites= 42 P= 5.0e-001
 0.000784 0.939270 0.001890 0.058056
 0.000784 0.031546 0.966886 0.000784
 0.020758 0.961223 0.001890 0.016130
 0.995436 0.001890 0.001890 0.000784
 0.016130 0.091815 0.843368 0.048688
 0.058056 0.752417 0.001890 0.187637
 0.016130 0.981196 0.001890 0.000784
 0.000784 0.996542 0.001890 0.000784

MOTIF 4-GCTGCAGC STREME-4
letter-probability matrix: alength= 4 w= 8 nsites= 49 P= 5.0e-001
 0.026085 0.100003 0.836172 0.037740
 0.001059 0.859303 0.063260 0.076378
 0.114726 0.002552 0.002552 0.880170
 0.011418 0.027578 0.946461 0.014543
 0.014543 0.946461 0.027578 0.011418
 0.880170 0.002552 0.002552 0.114726
 0.076378 0.063260 0.859303 0.001059
 0.037740 0.836172 0.100003 0.026085

MOTIF 5-GAGAAGGA STREME-5
letter-probability matrix: alength= 4 w= 8 nsites= 22 P= 7.6e-001
 0.001045 0.002520 0.995389 0.001045
 0.894740 0.002520 0.101694 0.001045
 0.001045 0.101534 0.896375 0.001045
 0.993914 0.002520 0.002520 0.001045
 0.993914 0.002520 0.002520 0.001045
 0.100060 0.151281 0.747614 0.001045
 0.001045 0.002520 0.945962 0.050473
 0.745176 0.002520 0.251259 0.001045

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Stopped because maximum number of motifs (5) reached.
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COMMAND:	streme --p ../result/final_prediction/K562/fasta/RankLinear5.0_60/NONO.fasta --oc ../result/final_prediction/K562/inference_raw/STREME/RankLinear5.0_60_NONO/ --w 8 --nmotifs 5 --verbosity 1
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CPU:		c22n07.farnam.hpc.yale.internal
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FINALTIME:	3.84 seconds
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