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STREME - Sensitive, Thorough, Rapid, Enriched Motif Elicitation
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MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800)

For further information on how to interpret these results please access https://meme-suite.org/meme.
To get a copy of the MEME Suite software please access https://meme-suite.org.

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REFERENCE
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If you use this program in your research, please cite:

Timothy L. Bailey,
"STREME: Accurate and versatile sequence motif discovery",
bioRxiv, (preprint), Nov. 23, 2020.
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ALPHABET= ACGT

strands: + -

Background letter frequencies
A 0.194 C 0.306 G 0.306 T 0.194 

MOTIF 1-GVTGACAG STREME-1
letter-probability matrix: alength= 4 w= 8 nsites= 42 P= 1.2e-001
 0.187984 0.001320 0.630430 0.180266
 0.286547 0.232682 0.330634 0.150136
 0.000833 0.001320 0.001320 0.996528
 0.000833 0.001320 0.967173 0.030675
 0.996528 0.001320 0.001320 0.000833
 0.000833 0.997014 0.001320 0.000833
 0.996528 0.001320 0.001320 0.000833
 0.000833 0.001320 0.817677 0.180170

MOTIF 2-CCACGTGG STREME-2
letter-probability matrix: alength= 4 w= 8 nsites= 62 P= 5.0e-001
 0.109605 0.770459 0.110142 0.009793
 0.017389 0.980235 0.001456 0.000920
 0.929864 0.001456 0.001456 0.067223
 0.004070 0.993554 0.001456 0.000920
 0.000920 0.001456 0.993554 0.004070
 0.067223 0.001456 0.001456 0.929864
 0.000920 0.001456 0.980235 0.017389
 0.009793 0.110142 0.770459 0.109605

MOTIF 3-AGGTGGGA STREME-3
letter-probability matrix: alength= 4 w= 8 nsites= 57 P= 7.7e-001
 0.794999 0.053603 0.057072 0.094326
 0.031920 0.004225 0.931936 0.031920
 0.031920 0.079276 0.856884 0.031920
 0.000867 0.101162 0.001373 0.896598
 0.013722 0.014228 0.940130 0.031920
 0.053096 0.001373 0.944664 0.000867
 0.126139 0.094833 0.778162 0.000867
 0.922077 0.010598 0.053603 0.013722

MOTIF 4-AAAGCAGG STREME-4
letter-probability matrix: alength= 4 w= 8 nsites= 37 P= 9.7e-001
 0.774094 0.042539 0.100623 0.082743
 0.907520 0.089541 0.001801 0.001137
 0.983158 0.001801 0.013904 0.001137
 0.041875 0.009593 0.865789 0.082743
 0.046816 0.909508 0.001801 0.041875
 0.907318 0.042539 0.001801 0.048341
 0.001137 0.001801 0.995924 0.001137
 0.041875 0.042539 0.873712 0.041875

MOTIF 5-TCCCCACT STREME-5
letter-probability matrix: alength= 4 w= 8 nsites= 19 P= 1.0e+000
 0.046654 0.002007 0.047393 0.903946
 0.001267 0.897481 0.054598 0.046654
 0.092186 0.859153 0.002007 0.046654
 0.001267 0.995459 0.002007 0.001267
 0.001267 0.950073 0.047393 0.001267
 0.928194 0.002007 0.068532 0.001267
 0.009948 0.667457 0.230409 0.092186
 0.001267 0.002007 0.185102 0.811624

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Stopped because maximum number of motifs (5) reached.
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COMMAND:	streme --p ../result/final_prediction/K562/fasta/RankLinear5.0_60/NKRF.fasta --oc ../result/final_prediction/K562/inference_raw/STREME/RankLinear5.0_60_NKRF/ --w 8 --nmotifs 5 --verbosity 1
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CPU:		c22n10.farnam.hpc.yale.internal
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FINALTIME:	3.67 seconds
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