********************************************************************************
STREME - Sensitive, Thorough, Rapid, Enriched Motif Elicitation
********************************************************************************
MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800)

For further information on how to interpret these results please access https://meme-suite.org/meme.
To get a copy of the MEME Suite software please access https://meme-suite.org.

********************************************************************************


********************************************************************************
REFERENCE
********************************************************************************
If you use this program in your research, please cite:

Timothy L. Bailey,
"STREME: Accurate and versatile sequence motif discovery",
bioRxiv, (preprint), Nov. 23, 2020.
********************************************************************************


ALPHABET= ACGT

strands: + -

Background letter frequencies
A 0.241 C 0.259 G 0.259 T 0.241 

MOTIF 1-CCAATSAG STREME-1
letter-probability matrix: alength= 4 w= 8 nsites= 244 P= 4.0e-007
 0.000203 0.999377 0.000218 0.000203
 0.000203 0.999377 0.000218 0.000203
 0.970068 0.000218 0.000218 0.029497
 0.999362 0.000218 0.000218 0.000203
 0.000203 0.000218 0.000218 0.999362
 0.056193 0.569207 0.370652 0.003949
 0.749796 0.017903 0.232098 0.000203
 0.068614 0.118684 0.812500 0.000203

MOTIF 2-CAYGTGAC STREME-2
letter-probability matrix: alength= 4 w= 8 nsites= 125 P= 2.3e-003
 0.000359 0.998896 0.000386 0.000359
 0.998869 0.000386 0.000386 0.000359
 0.000359 0.352043 0.000386 0.647212
 0.168420 0.000386 0.830835 0.000359
 0.000359 0.000386 0.010715 0.988540
 0.000359 0.000386 0.998896 0.000359
 0.983274 0.005551 0.010816 0.000359
 0.000359 0.962886 0.000386 0.036369

MOTIF 3-CCCCACCC STREME-3
letter-probability matrix: alength= 4 w= 8 nsites= 68 P= 3.7e-002
 0.051364 0.862498 0.000942 0.085196
 0.000876 0.735815 0.000942 0.262367
 0.000876 0.961669 0.036579 0.000876
 0.051446 0.936303 0.000942 0.011309
 0.645344 0.000942 0.201744 0.151970
 0.026161 0.972021 0.000942 0.000876
 0.000876 0.997306 0.000942 0.000876
 0.000876 0.997306 0.000942 0.000876

MOTIF 4-TACAGAGA STREME-4
letter-probability matrix: alength= 4 w= 8 nsites= 31 P= 3.0e-001
 0.001291 0.001388 0.001388 0.995933
 0.995933 0.001388 0.001388 0.001291
 0.001291 0.996030 0.001388 0.001291
 0.995933 0.001388 0.001388 0.001291
 0.075687 0.001388 0.921634 0.001291
 0.921537 0.001388 0.075784 0.001291
 0.038429 0.001388 0.958892 0.001291
 0.796234 0.001388 0.001388 0.200990

MOTIF 5-ATTTCCCA STREME-5
letter-probability matrix: alength= 4 w= 8 nsites= 19 P= 5.0e-001
 0.993739 0.002137 0.002137 0.001987
 0.001987 0.002137 0.002137 0.993739
 0.001987 0.002137 0.002137 0.993739
 0.001987 0.002137 0.002137 0.993739
 0.001987 0.993889 0.002137 0.001987
 0.001987 0.993889 0.002137 0.001987
 0.001987 0.936721 0.059305 0.001987
 0.936571 0.002137 0.059305 0.001987

********************************************************************************
Stopped because maximum number of motifs (5) reached.
********************************************************************************
COMMAND:	streme --p ../result/final_prediction/K562/fasta/RankLinear5.0_60/NFYB.fasta --oc ../result/final_prediction/K562/inference_raw/STREME/RankLinear5.0_60_NFYB/ --w 8 --nmotifs 5 --verbosity 1
********************************************************************************
CPU:		c22n09.farnam.hpc.yale.internal
********************************************************************************
FINALTIME:	1.36 seconds
********************************************************************************