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STREME - Sensitive, Thorough, Rapid, Enriched Motif Elicitation
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MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800)

For further information on how to interpret these results please access https://meme-suite.org/meme.
To get a copy of the MEME Suite software please access https://meme-suite.org.

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REFERENCE
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If you use this program in your research, please cite:

Timothy L. Bailey,
"STREME: Accurate and versatile sequence motif discovery",
bioRxiv, (preprint), Nov. 23, 2020.
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ALPHABET= ACGT

strands: + -

Background letter frequencies
A 0.211 C 0.289 G 0.289 T 0.211 

MOTIF 1-GGGAGSAC STREME-1
letter-probability matrix: alength= 4 w= 8 nsites= 60 P= 3.0e-001
 0.000995 0.001361 0.996650 0.000995
 0.000995 0.001361 0.987851 0.009793
 0.000995 0.001361 0.996650 0.000995
 0.930966 0.066678 0.001361 0.000995
 0.099445 0.001361 0.898199 0.000995
 0.066312 0.385080 0.482192 0.066417
 0.963624 0.034020 0.001361 0.000995
 0.000995 0.996650 0.001361 0.000995

MOTIF 2-CTGTGTGA STREME-2
letter-probability matrix: alength= 4 w= 8 nsites= 26 P= 3.0e-001
 0.019191 0.935355 0.026264 0.019191
 0.019191 0.026264 0.026264 0.928282
 0.019191 0.026264 0.935355 0.019191
 0.019191 0.026264 0.026264 0.928282
 0.019191 0.026264 0.935355 0.019191
 0.019191 0.026264 0.026264 0.928282
 0.019191 0.026264 0.935355 0.019191
 0.928282 0.026264 0.026264 0.019191

MOTIF 3-CAGCCTGG STREME-3
letter-probability matrix: alength= 4 w= 8 nsites= 24 P= 5.0e-001
 0.001397 0.976302 0.001912 0.020388
 0.943338 0.001912 0.053353 0.001397
 0.001397 0.001912 0.995294 0.001397
 0.001397 0.949418 0.001912 0.047273
 0.001397 0.949418 0.001912 0.047273
 0.001397 0.047788 0.001912 0.948903
 0.047273 0.001912 0.860964 0.089851
 0.001397 0.139984 0.857222 0.001397

MOTIF 4-CTCCCCAA STREME-4
letter-probability matrix: alength= 4 w= 8 nsites= 17 P= 5.0e-001
 0.124804 0.870769 0.002558 0.001869
 0.063238 0.002558 0.063927 0.870277
 0.063238 0.870966 0.063927 0.001869
 0.001869 0.993704 0.002558 0.001869
 0.001869 0.993704 0.002558 0.001869
 0.001869 0.932335 0.063927 0.001869
 0.993015 0.002558 0.002558 0.001869
 0.993015 0.002558 0.002558 0.001869

MOTIF 5-CTCTCTGA STREME-5
letter-probability matrix: alength= 4 w= 8 nsites= 16 P= 1.0e+000
 0.001865 0.932479 0.063791 0.001865
 0.001865 0.002552 0.002552 0.993030
 0.063103 0.871142 0.063889 0.001865
 0.124539 0.002552 0.002552 0.870357
 0.001865 0.993718 0.002552 0.001865
 0.001865 0.002552 0.002552 0.993030
 0.001865 0.002552 0.993718 0.001865
 0.993030 0.002552 0.002552 0.001865

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Stopped because maximum number of motifs (5) reached.
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COMMAND:	streme --p ../result/final_prediction/K562/fasta/RankLinear5.0_60/NFXL1.fasta --oc ../result/final_prediction/K562/inference_raw/STREME/RankLinear5.0_60_NFXL1/ --w 8 --nmotifs 5 --verbosity 1
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CPU:		c17n09.farnam.hpc.yale.internal
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FINALTIME:	3.31 seconds
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