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STREME - Sensitive, Thorough, Rapid, Enriched Motif Elicitation
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MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800)

For further information on how to interpret these results please access https://meme-suite.org/meme.
To get a copy of the MEME Suite software please access https://meme-suite.org.

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REFERENCE
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If you use this program in your research, please cite:

Timothy L. Bailey,
"STREME: Accurate and versatile sequence motif discovery",
bioRxiv, (preprint), Nov. 23, 2020.
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ALPHABET= ACGT

strands: + -

Background letter frequencies
A 0.241 C 0.259 G 0.259 T 0.241 

MOTIF 1-ACYCGGTA STREME-1
letter-probability matrix: alength= 4 w= 8 nsites= 35 P= 3.0e-001
 0.926607 0.070887 0.001299 0.001207
 0.001207 0.996287 0.001299 0.001207
 0.035946 0.472960 0.001299 0.489796
 0.001207 0.926810 0.036037 0.035946
 0.001207 0.001299 0.996287 0.001207
 0.001207 0.001299 0.996287 0.001207
 0.246067 0.001299 0.192219 0.560416
 0.926607 0.070887 0.001299 0.001207

MOTIF 2-GGGGTGAY STREME-2
letter-probability matrix: alength= 4 w= 8 nsites= 33 P= 3.0e-001
 0.001077 0.201455 0.641227 0.156241
 0.001077 0.001159 0.996687 0.001077
 0.001077 0.001159 0.983857 0.013907
 0.032070 0.063144 0.872716 0.032070
 0.001077 0.001159 0.001159 0.996606
 0.001077 0.032201 0.965644 0.001077
 0.996606 0.001159 0.001159 0.001077
 0.001077 0.622563 0.001159 0.375201

MOTIF 3-AGATGGMV STREME-3
letter-probability matrix: alength= 4 w= 8 nsites= 53 P= 3.5e-001
 0.997704 0.000784 0.000784 0.000729
 0.000729 0.000784 0.997759 0.000729
 0.997704 0.000784 0.000784 0.000729
 0.000729 0.254044 0.000784 0.744443
 0.000729 0.042722 0.955820 0.000729
 0.000729 0.000784 0.997759 0.000729
 0.574663 0.423824 0.000784 0.000729
 0.448408 0.254711 0.296152 0.000729

MOTIF 4-ACGCAGAA STREME-4
letter-probability matrix: alength= 4 w= 8 nsites= 28 P= 5.0e-001
 0.958649 0.001393 0.038663 0.001295
 0.001295 0.692419 0.001393 0.304892
 0.001295 0.001393 0.996016 0.001295
 0.091383 0.681468 0.225853 0.001295
 0.958649 0.001393 0.001393 0.038565
 0.001295 0.076052 0.921357 0.001295
 0.995918 0.001393 0.001393 0.001295
 0.943220 0.016822 0.001393 0.038565

MOTIF 5-ATCCCAGC STREME-5
letter-probability matrix: alength= 4 w= 8 nsites= 64 P= 5.0e-001
 0.677135 0.135457 0.147668 0.039740
 0.000678 0.039854 0.004459 0.955009
 0.039677 0.935686 0.020229 0.004407
 0.020178 0.782597 0.059291 0.137934
 0.000678 0.900353 0.078791 0.020178
 0.876947 0.020229 0.098417 0.004407
 0.059240 0.020229 0.919853 0.000678
 0.059366 0.900165 0.000729 0.039740

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Stopped because maximum number of motifs (5) reached.
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COMMAND:	streme --p ../result/final_prediction/K562/fasta/RankLinear5.0_60/NFRKB.fasta --oc ../result/final_prediction/K562/inference_raw/STREME/RankLinear5.0_60_NFRKB/ --w 8 --nmotifs 5 --verbosity 1
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CPU:		c23n02.farnam.hpc.yale.internal
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FINALTIME:	1.59 seconds
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