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STREME - Sensitive, Thorough, Rapid, Enriched Motif Elicitation
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MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800)

For further information on how to interpret these results please access https://meme-suite.org/meme.
To get a copy of the MEME Suite software please access https://meme-suite.org.

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REFERENCE
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If you use this program in your research, please cite:

Timothy L. Bailey,
"STREME: Accurate and versatile sequence motif discovery",
bioRxiv, (preprint), Nov. 23, 2020.
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ALPHABET= ACGT

strands: + -

Background letter frequencies
A 0.259 C 0.241 G 0.241 T 0.259 

MOTIF 1-WBTTGGCA STREME-1
letter-probability matrix: alength= 4 w= 8 nsites= 228 P= 9.5e-008
 0.516401 0.036959 0.113709 0.332931
 0.091508 0.360182 0.292951 0.255358
 0.000340 0.289898 0.000316 0.709446
 0.000340 0.000316 0.000316 0.999028
 0.000340 0.000316 0.999004 0.000340
 0.000340 0.000316 0.999004 0.000340
 0.000340 0.999004 0.000316 0.000340
 0.918523 0.000316 0.000316 0.080844

MOTIF 2-CCTCAGCC STREME-2
letter-probability matrix: alength= 4 w= 8 nsites= 27 P= 1.7e-001
 0.023536 0.931009 0.021918 0.023536
 0.023536 0.931009 0.021918 0.023536
 0.023536 0.021918 0.021918 0.932627
 0.023536 0.931009 0.021918 0.023536
 0.932627 0.021918 0.021918 0.023536
 0.023536 0.021918 0.931009 0.023536
 0.023536 0.931009 0.021918 0.023536
 0.023536 0.931009 0.021918 0.023536

MOTIF 3-ACCCGGGA STREME-3
letter-probability matrix: alength= 4 w= 8 nsites= 19 P= 5.0e-001
 0.819240 0.118448 0.060141 0.002171
 0.002171 0.935517 0.002022 0.060291
 0.002171 0.935517 0.002022 0.060291
 0.002171 0.993637 0.002022 0.002171
 0.177092 0.060141 0.760595 0.002171
 0.060291 0.002022 0.935517 0.002171
 0.002171 0.002022 0.993637 0.002171
 0.935666 0.002022 0.060141 0.002171

MOTIF 4-GWGACAGA STREME-4
letter-probability matrix: alength= 4 w= 8 nsites= 24 P= 7.6e-001
 0.001450 0.001351 0.995748 0.001450
 0.481749 0.040245 0.001351 0.476656
 0.001450 0.001351 0.956916 0.040282
 0.995848 0.001351 0.001351 0.001450
 0.001450 0.984212 0.001351 0.012987
 0.879227 0.079140 0.040183 0.001450
 0.001450 0.001351 0.956916 0.040282
 0.995848 0.001351 0.001351 0.001450

MOTIF 5-AGCTACTY STREME-5
letter-probability matrix: alength= 4 w= 8 nsites= 24 P= 7.6e-001
 0.994974 0.001635 0.001635 0.001756
 0.001756 0.095643 0.900846 0.001756
 0.001756 0.853691 0.001635 0.142919
 0.001756 0.001635 0.001635 0.994974
 0.994974 0.001635 0.001635 0.001756
 0.001756 0.853387 0.143101 0.001756
 0.001756 0.095643 0.001635 0.900967
 0.048760 0.571212 0.001635 0.378393

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Stopped because maximum number of motifs (5) reached.
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COMMAND:	streme --p ../result/final_prediction/K562/fasta/RankLinear5.0_60/NFIC.fasta --oc ../result/final_prediction/K562/inference_raw/STREME/RankLinear5.0_60_NFIC/ --w 8 --nmotifs 5 --verbosity 1
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CPU:		c22n12.farnam.hpc.yale.internal
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FINALTIME:	1.72 seconds
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