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STREME - Sensitive, Thorough, Rapid, Enriched Motif Elicitation
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MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800)

For further information on how to interpret these results please access https://meme-suite.org/meme.
To get a copy of the MEME Suite software please access https://meme-suite.org.

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REFERENCE
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If you use this program in your research, please cite:

Timothy L. Bailey,
"STREME: Accurate and versatile sequence motif discovery",
bioRxiv, (preprint), Nov. 23, 2020.
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ALPHABET= ACGT

strands: + -

Background letter frequencies
A 0.303 C 0.197 G 0.197 T 0.303 

MOTIF 1-GACTCAGC STREME-1
letter-probability matrix: alength= 4 w= 8 nsites= 194 P= 2.7e-008
 0.000218 0.000142 0.999421 0.000218
 0.999497 0.000142 0.000142 0.000218
 0.008622 0.981008 0.000142 0.010228
 0.040715 0.000142 0.005139 0.954004
 0.035537 0.951982 0.000142 0.012339
 0.979381 0.000142 0.020259 0.000218
 0.015257 0.000142 0.826463 0.158138
 0.000218 0.999421 0.000142 0.000218

MOTIF 2-CCAAACTG STREME-2
letter-probability matrix: alength= 4 w= 8 nsites= 29 P= 5.0e-001
 0.002109 0.994408 0.001374 0.002109
 0.002109 0.994408 0.001374 0.002109
 0.898420 0.098097 0.001374 0.002109
 0.839983 0.001374 0.001374 0.157269
 0.975155 0.001374 0.001374 0.022097
 0.002109 0.897685 0.001374 0.098832
 0.237771 0.001374 0.001374 0.759480
 0.098832 0.001374 0.897685 0.002109

MOTIF 3-ATATACCC STREME-3
letter-probability matrix: alength= 4 w= 8 nsites= 41 P= 5.0e-001
 0.961757 0.000989 0.000989 0.036265
 0.085809 0.105456 0.000989 0.807746
 0.752824 0.209922 0.035737 0.001517
 0.140731 0.015373 0.000989 0.842906
 0.996504 0.000989 0.000989 0.001517
 0.001517 0.961229 0.000989 0.036265
 0.082963 0.914530 0.000989 0.001517
 0.001517 0.957014 0.000989 0.040480

MOTIF 4-CTCCTAAG STREME-4
letter-probability matrix: alength= 4 w= 8 nsites= 21 P= 7.6e-001
 0.001978 0.918576 0.001289 0.078157
 0.092708 0.001289 0.001289 0.904713
 0.092708 0.813294 0.001289 0.092708
 0.001978 0.812708 0.001289 0.184025
 0.001978 0.001289 0.001289 0.995444
 0.995444 0.001289 0.001289 0.001978
 0.804733 0.001289 0.183337 0.010641
 0.138293 0.046582 0.813148 0.001978

MOTIF 5-AATTACCA STREME-5
letter-probability matrix: alength= 4 w= 8 nsites= 33 P= 7.9e-001
 0.934957 0.001222 0.044167 0.019653
 0.561479 0.044167 0.254475 0.139878
 0.001875 0.130472 0.044167 0.823485
 0.025015 0.001222 0.001222 0.972541
 0.995680 0.001222 0.001222 0.001875
 0.001875 0.995027 0.001222 0.001875
 0.001875 0.995027 0.001222 0.001875
 0.995680 0.001222 0.001222 0.001875

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Stopped because maximum number of motifs (5) reached.
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COMMAND:	streme --p ../result/final_prediction/K562/fasta/RankLinear5.0_60/NFE2L1.fasta --oc ../result/final_prediction/K562/inference_raw/STREME/RankLinear5.0_60_NFE2L1/ --w 8 --nmotifs 5 --verbosity 1
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CPU:		c23n03.farnam.hpc.yale.internal
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FINALTIME:	1.31 seconds
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