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STREME - Sensitive, Thorough, Rapid, Enriched Motif Elicitation
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MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800)

For further information on how to interpret these results please access https://meme-suite.org/meme.
To get a copy of the MEME Suite software please access https://meme-suite.org.

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REFERENCE
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If you use this program in your research, please cite:

Timothy L. Bailey,
"STREME: Accurate and versatile sequence motif discovery",
bioRxiv, (preprint), Nov. 23, 2020.
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ALPHABET= ACGT

strands: + -

Background letter frequencies
A 0.252 C 0.248 G 0.248 T 0.252 

MOTIF 1-ATGASTCA STREME-1
letter-probability matrix: alength= 4 w= 8 nsites= 79 P= 2.4e-002
 0.677718 0.049872 0.256391 0.016018
 0.000558 0.015912 0.000550 0.982980
 0.000558 0.000550 0.806695 0.192197
 0.982980 0.015912 0.000550 0.000558
 0.026394 0.372759 0.550835 0.050011
 0.000558 0.000550 0.000550 0.998341
 0.000558 0.998334 0.000550 0.000558
 0.982980 0.015912 0.000550 0.000558

MOTIF 2-ATTTTCCA STREME-2
letter-probability matrix: alength= 4 w= 8 nsites= 71 P= 9.5e-002
 0.743644 0.103319 0.073897 0.079140
 0.048919 0.150790 0.154300 0.645990
 0.022539 0.009783 0.022529 0.945149
 0.000789 0.000779 0.000779 0.997652
 0.087858 0.000779 0.000779 0.910583
 0.015289 0.983142 0.000779 0.000789
 0.000789 0.973254 0.000779 0.025177
 0.869624 0.066239 0.022564 0.041573

MOTIF 3-GGAGTGCA STREME-3
letter-probability matrix: alength= 4 w= 8 nsites= 34 P= 3.0e-001
 0.022873 0.022582 0.931673 0.022873
 0.022873 0.022582 0.931673 0.022873
 0.931964 0.022582 0.022582 0.022873
 0.022873 0.022582 0.931673 0.022873
 0.022873 0.022582 0.022582 0.931964
 0.022873 0.022582 0.931673 0.022873
 0.022873 0.931673 0.022582 0.022873
 0.931964 0.022582 0.022582 0.022873

MOTIF 4-GAGATAAG STREME-4
letter-probability matrix: alength= 4 w= 8 nsites= 41 P= 5.0e-001
 0.070652 0.007867 0.815964 0.105517
 0.926865 0.001241 0.001241 0.070652
 0.035899 0.001241 0.961602 0.001257
 0.868600 0.059507 0.001241 0.070652
 0.001257 0.090298 0.001241 0.907203
 0.977594 0.001241 0.001241 0.019923
 0.926977 0.001241 0.035883 0.035899
 0.105517 0.059507 0.729459 0.105517

MOTIF 5-AGCCTGGG STREME-5
letter-probability matrix: alength= 4 w= 8 nsites= 30 P= 5.0e-001
 0.931964 0.022582 0.022582 0.022873
 0.022873 0.022582 0.931673 0.022873
 0.022873 0.931673 0.022582 0.022873
 0.022873 0.931673 0.022582 0.022873
 0.022873 0.022582 0.022582 0.931964
 0.022873 0.022582 0.931673 0.022873
 0.022873 0.022582 0.931673 0.022873
 0.022873 0.022582 0.931673 0.022873

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Stopped because maximum number of motifs (5) reached.
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COMMAND:	streme --p ../result/final_prediction/K562/fasta/RankLinear5.0_60/NFATC3.fasta --oc ../result/final_prediction/K562/inference_raw/STREME/RankLinear5.0_60_NFATC3/ --w 8 --nmotifs 5 --verbosity 1
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CPU:		c22n11.farnam.hpc.yale.internal
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FINALTIME:	2.41 seconds
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