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STREME - Sensitive, Thorough, Rapid, Enriched Motif Elicitation
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MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800)

For further information on how to interpret these results please access https://meme-suite.org/meme.
To get a copy of the MEME Suite software please access https://meme-suite.org.

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REFERENCE
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If you use this program in your research, please cite:

Timothy L. Bailey,
"STREME: Accurate and versatile sequence motif discovery",
bioRxiv, (preprint), Nov. 23, 2020.
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ALPHABET= ACGT

strands: + -

Background letter frequencies
A 0.191 C 0.309 G 0.309 T 0.191 

MOTIF 1-CCAATCAC STREME-1
letter-probability matrix: alength= 4 w= 8 nsites= 39 P= 1.2e-001
 0.001038 0.996240 0.001684 0.001038
 0.038773 0.882915 0.077274 0.001038
 0.957860 0.039418 0.001684 0.001038
 0.844291 0.115252 0.039418 0.001038
 0.001038 0.039418 0.001684 0.957860
 0.001038 0.958445 0.039479 0.001038
 0.811218 0.039540 0.132583 0.016659
 0.076629 0.755082 0.091661 0.076629

MOTIF 2-CCATTGGC STREME-2
letter-probability matrix: alength= 4 w= 8 nsites= 34 P= 1.7e-001
 0.001682 0.993909 0.002727 0.001682
 0.001682 0.714428 0.002727 0.281163
 0.992863 0.002727 0.002727 0.001682
 0.001682 0.002727 0.002727 0.992863
 0.123929 0.002727 0.002727 0.870616
 0.001682 0.002727 0.993909 0.001682
 0.001682 0.002727 0.993909 0.001682
 0.001682 0.748678 0.002727 0.246913

MOTIF 3-CCCACCCC STREME-3
letter-probability matrix: alength= 4 w= 8 nsites= 69 P= 3.6e-001
 0.000711 0.919493 0.001154 0.078642
 0.000711 0.945721 0.027005 0.026563
 0.013637 0.984498 0.001154 0.000711
 0.769921 0.001154 0.228214 0.000711
 0.083785 0.738368 0.073059 0.104788
 0.000711 0.966730 0.015083 0.017476
 0.005656 0.957744 0.007482 0.029118
 0.078516 0.893726 0.027047 0.000711

MOTIF 4-AAAACCYG STREME-4
letter-probability matrix: alength= 4 w= 8 nsites= 66 P= 5.0e-001
 0.979338 0.019327 0.000826 0.000509
 0.979338 0.000826 0.019327 0.000509
 0.923656 0.019327 0.056509 0.000509
 0.867064 0.000826 0.019327 0.112784
 0.000509 0.967038 0.031944 0.000509
 0.000509 0.979655 0.019327 0.000509
 0.000509 0.563094 0.037948 0.398449
 0.000509 0.000826 0.998156 0.000509

MOTIF 5-CTGTTGCC STREME-5
letter-probability matrix: alength= 4 w= 8 nsites= 25 P= 1.0e+000
 0.111191 0.862193 0.025110 0.001506
 0.001506 0.256168 0.002443 0.739882
 0.001506 0.002443 0.994544 0.001506
 0.001506 0.002443 0.002443 0.993607
 0.001506 0.222522 0.002443 0.773528
 0.056261 0.002443 0.939790 0.001506
 0.001506 0.994544 0.002443 0.001506
 0.001506 0.994544 0.002443 0.001506

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Stopped because maximum number of motifs (5) reached.
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COMMAND:	streme --p ../result/final_prediction/K562/fasta/RankLinear5.0_60/NEUROD1.fasta --oc ../result/final_prediction/K562/inference_raw/STREME/RankLinear5.0_60_NEUROD1/ --w 8 --nmotifs 5 --verbosity 1
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CPU:		c22n09.farnam.hpc.yale.internal
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FINALTIME:	1.37 seconds
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