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STREME - Sensitive, Thorough, Rapid, Enriched Motif Elicitation
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MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800)

For further information on how to interpret these results please access https://meme-suite.org/meme.
To get a copy of the MEME Suite software please access https://meme-suite.org.

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REFERENCE
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If you use this program in your research, please cite:

Timothy L. Bailey,
"STREME: Accurate and versatile sequence motif discovery",
bioRxiv, (preprint), Nov. 23, 2020.
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ALPHABET= ACGT

strands: + -

Background letter frequencies
A 0.195 C 0.305 G 0.305 T 0.195 

MOTIF 1-GGAGGCAG STREME-1
letter-probability matrix: alength= 4 w= 8 nsites= 26 P= 5.0e-001
 0.001028 0.008598 0.974218 0.016156
 0.062492 0.030843 0.905637 0.001028
 0.984899 0.001608 0.001608 0.011885
 0.118461 0.016736 0.827232 0.037572
 0.074233 0.222649 0.628886 0.074233
 0.025390 0.918703 0.018335 0.037572
 0.995756 0.001608 0.001608 0.001028
 0.111012 0.001608 0.886352 0.001028

MOTIF 2-GCTGAAAA STREME-2
letter-probability matrix: alength= 4 w= 8 nsites= 16 P= 5.0e-001
 0.001986 0.003106 0.992922 0.001986
 0.001986 0.851520 0.144508 0.001986
 0.001986 0.003106 0.003106 0.991802
 0.001986 0.144508 0.851520 0.001986
 0.921215 0.073694 0.003106 0.001986
 0.779813 0.073694 0.003106 0.143388
 0.921215 0.073694 0.003106 0.001986
 0.850400 0.144508 0.003106 0.001986

MOTIF 3-CCGCGYCC STREME-3
letter-probability matrix: alength= 4 w= 8 nsites= 38 P= 6.7e-001
 0.169129 0.826846 0.002455 0.001570
 0.001570 0.994406 0.002455 0.001570
 0.057363 0.002455 0.938612 0.001570
 0.001570 0.994406 0.002455 0.001570
 0.244112 0.002455 0.751864 0.001570
 0.066220 0.471139 0.002455 0.460187
 0.001570 0.994406 0.002455 0.001570
 0.001570 0.994406 0.002455 0.001570

MOTIF 4-AATACAAG STREME-4
letter-probability matrix: alength= 4 w= 8 nsites= 13 P= 1.0e+000
 0.831377 0.069579 0.030522 0.068522
 0.925613 0.002933 0.069579 0.001875
 0.001875 0.030522 0.002933 0.964670
 0.925613 0.002933 0.069579 0.001875
 0.001875 0.726086 0.203517 0.068522
 0.992260 0.002933 0.002933 0.001875
 0.992260 0.002933 0.002933 0.001875
 0.269754 0.002933 0.725438 0.001875

MOTIF 5-CAGACACC STREME-5
letter-probability matrix: alength= 4 w= 8 nsites= 35 P= 1.0e+000
 0.030600 0.877676 0.090887 0.000837
 0.728437 0.060836 0.209890 0.000837
 0.110423 0.001310 0.785772 0.102495
 0.754840 0.153628 0.001310 0.090222
 0.000837 0.997016 0.001310 0.000837
 0.946484 0.001310 0.051369 0.000837
 0.000837 0.997016 0.001310 0.000837
 0.168328 0.588449 0.182764 0.060459

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Stopped because maximum number of motifs (5) reached.
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COMMAND:	streme --p ../result/final_prediction/K562/fasta/RankLinear5.0_60/NELFE.fasta --oc ../result/final_prediction/K562/inference_raw/STREME/RankLinear5.0_60_NELFE/ --w 8 --nmotifs 5 --verbosity 1
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CPU:		c22n10.farnam.hpc.yale.internal
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FINALTIME:	5.00 seconds
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