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STREME - Sensitive, Thorough, Rapid, Enriched Motif Elicitation
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MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800)

For further information on how to interpret these results please access https://meme-suite.org/meme.
To get a copy of the MEME Suite software please access https://meme-suite.org.

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REFERENCE
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If you use this program in your research, please cite:

Timothy L. Bailey,
"STREME: Accurate and versatile sequence motif discovery",
bioRxiv, (preprint), Nov. 23, 2020.
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ALPHABET= ACGT

strands: + -

Background letter frequencies
A 0.157 C 0.343 G 0.343 T 0.157 

MOTIF 1-CCCCGACG STREME-1
letter-probability matrix: alength= 4 w= 8 nsites= 47 P= 3.3e-001
 0.054009 0.943705 0.001569 0.000717
 0.128071 0.728635 0.142577 0.000717
 0.000717 0.996998 0.001569 0.000717
 0.000717 0.996998 0.001569 0.000717
 0.000717 0.001569 0.996998 0.000717
 0.996146 0.001569 0.001569 0.000717
 0.000717 0.996998 0.001569 0.000717
 0.000717 0.001569 0.996998 0.000717

MOTIF 2-ATCTCCAG STREME-2
letter-probability matrix: alength= 4 w= 8 nsites= 23 P= 5.0e-001
 0.921005 0.002265 0.029955 0.046775
 0.001035 0.026910 0.109477 0.862578
 0.001035 0.858297 0.093893 0.046775
 0.001035 0.048005 0.093893 0.857067
 0.001035 0.949925 0.002265 0.046775
 0.046775 0.904185 0.002265 0.046775
 0.939947 0.048005 0.002265 0.009783
 0.046775 0.048005 0.904185 0.001035

MOTIF 3-SMMACCAD STREME-3
letter-probability matrix: alength= 4 w= 8 nsites= 74 P= 6.4e-001
 0.128770 0.566392 0.304439 0.000399
 0.374527 0.483078 0.141996 0.000399
 0.353378 0.645350 0.000873 0.000399
 0.997855 0.000873 0.000873 0.000399
 0.000399 0.998329 0.000873 0.000399
 0.000399 0.695133 0.106701 0.197766
 0.997855 0.000873 0.000873 0.000399
 0.341569 0.000873 0.321357 0.336201

MOTIF 4-SAGGCGGC STREME-4
letter-probability matrix: alength= 4 w= 8 nsites= 30 P= 9.1e-001
 0.001281 0.328371 0.612433 0.057915
 0.993111 0.002804 0.002804 0.001281
 0.001281 0.201714 0.795724 0.001281
 0.001281 0.002804 0.983801 0.012113
 0.001281 0.994634 0.002804 0.001281
 0.001281 0.002804 0.994634 0.001281
 0.035566 0.002804 0.960349 0.001281
 0.001281 0.966317 0.002804 0.029598

MOTIF 5-AGCTGCGC STREME-5
letter-probability matrix: alength= 4 w= 8 nsites= 53 P= 9.6e-001
 0.828747 0.043580 0.115304 0.012369
 0.036467 0.134044 0.813920 0.015569
 0.036467 0.860002 0.073200 0.030331
 0.065685 0.054034 0.013328 0.866953
 0.015569 0.001766 0.981859 0.000807
 0.060785 0.915431 0.016157 0.007627
 0.036467 0.073200 0.853867 0.036467
 0.036524 0.809551 0.138357 0.015569

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Stopped because maximum number of motifs (5) reached.
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COMMAND:	streme --p ../result/final_prediction/K562/fasta/RankLinear5.0_60/NCOA6.fasta --oc ../result/final_prediction/K562/inference_raw/STREME/RankLinear5.0_60_NCOA6/ --w 8 --nmotifs 5 --verbosity 1
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CPU:		c22n11.farnam.hpc.yale.internal
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FINALTIME:	1.35 seconds
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