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STREME - Sensitive, Thorough, Rapid, Enriched Motif Elicitation
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MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800)

For further information on how to interpret these results please access https://meme-suite.org/meme.
To get a copy of the MEME Suite software please access https://meme-suite.org.

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REFERENCE
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If you use this program in your research, please cite:

Timothy L. Bailey,
"STREME: Accurate and versatile sequence motif discovery",
bioRxiv, (preprint), Nov. 23, 2020.
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ALPHABET= ACGT

strands: + -

Background letter frequencies
A 0.283 C 0.217 G 0.217 T 0.283 

MOTIF 1-ACTTKGGR STREME-1
letter-probability matrix: alength= 4 w= 8 nsites= 35 P= 5.0e-001
 0.996716 0.000995 0.000995 0.001294
 0.001294 0.996417 0.000995 0.001294
 0.001294 0.000995 0.000995 0.996716
 0.001294 0.000995 0.000995 0.996716
 0.046161 0.032726 0.332946 0.588168
 0.179358 0.000995 0.818353 0.001294
 0.109999 0.000995 0.887712 0.001294
 0.460271 0.000995 0.537440 0.001294

MOTIF 2-ACTATAAA STREME-2
letter-probability matrix: alength= 4 w= 8 nsites= 46 P= 7.9e-001
 0.853682 0.034897 0.057972 0.053448
 0.001380 0.989707 0.007533 0.001380
 0.035217 0.001061 0.068734 0.894988
 0.911602 0.068843 0.004168 0.015387
 0.137882 0.034897 0.034952 0.792269
 0.846817 0.015068 0.102898 0.035217
 0.894988 0.068734 0.034897 0.001380
 0.826659 0.001061 0.034897 0.137383

MOTIF 3-TGAGCCAA STREME-3
letter-probability matrix: alength= 4 w= 8 nsites= 31 P= 1.0e+000
 0.001492 0.001147 0.001147 0.996214
 0.074774 0.037729 0.886005 0.001492
 0.996214 0.001147 0.001147 0.001492
 0.111593 0.001147 0.875913 0.011347
 0.001492 0.959287 0.001147 0.038074
 0.001492 0.885769 0.001147 0.111593
 0.886350 0.074429 0.037729 0.001492
 0.671956 0.310261 0.016291 0.001492

MOTIF 4-GCCTGTAA STREME-4
letter-probability matrix: alength= 4 w= 8 nsites= 21 P= 1.0e+000
 0.046149 0.001390 0.861830 0.090631
 0.020164 0.958282 0.001390 0.020164
 0.001808 0.906170 0.001390 0.090631
 0.001808 0.001390 0.001390 0.995411
 0.020164 0.001390 0.976638 0.001808
 0.001808 0.001390 0.001390 0.995411
 0.862248 0.045730 0.001390 0.090631
 0.861962 0.001390 0.134840 0.001808

MOTIF 5-AGGCTGGA STREME-5
letter-probability matrix: alength= 4 w= 8 nsites= 22 P= 1.0e+000
 0.929202 0.066170 0.002011 0.002617
 0.002617 0.002011 0.992755 0.002617
 0.002617 0.002011 0.992755 0.002617
 0.002617 0.992755 0.002011 0.002617
 0.002617 0.028571 0.002011 0.966801
 0.002617 0.002011 0.992755 0.002617
 0.002617 0.002011 0.992755 0.002617
 0.755040 0.002011 0.002011 0.240938

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Stopped because maximum number of motifs (5) reached.
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COMMAND:	streme --p ../result/final_prediction/K562/fasta/RankLinear5.0_60/NCOA4.fasta --oc ../result/final_prediction/K562/inference_raw/STREME/RankLinear5.0_60_NCOA4/ --w 8 --nmotifs 5 --verbosity 1
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CPU:		c22n11.farnam.hpc.yale.internal
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FINALTIME:	1.46 seconds
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