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STREME - Sensitive, Thorough, Rapid, Enriched Motif Elicitation
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MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800)

For further information on how to interpret these results please access https://meme-suite.org/meme.
To get a copy of the MEME Suite software please access https://meme-suite.org.

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REFERENCE
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If you use this program in your research, please cite:

Timothy L. Bailey,
"STREME: Accurate and versatile sequence motif discovery",
bioRxiv, (preprint), Nov. 23, 2020.
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ALPHABET= ACGT

strands: + -

Background letter frequencies
A 0.396 C 0.104 G 0.104 T 0.396 

MOTIF 1-GTAATATA STREME-1
letter-probability matrix: alength= 4 w= 8 nsites= 57 P= 6.9e-002
 0.035982 0.009473 0.918564 0.035982
 0.035982 0.009473 0.009473 0.945073
 0.945073 0.009473 0.009473 0.035982
 0.945073 0.009473 0.009473 0.035982
 0.035982 0.009473 0.009473 0.945073
 0.945073 0.009473 0.009473 0.035982
 0.035982 0.009473 0.009473 0.945073
 0.945073 0.009473 0.009473 0.035982

MOTIF 2-GGTGTATA STREME-2
letter-probability matrix: alength= 4 w= 8 nsites= 12 P= 5.0e-001
 0.006979 0.001837 0.984204 0.006979
 0.006979 0.001837 0.984204 0.006979
 0.006979 0.001837 0.001837 0.989346
 0.006979 0.001837 0.984204 0.006979
 0.251823 0.001837 0.001837 0.744503
 0.867121 0.124063 0.001837 0.006979
 0.129204 0.001837 0.001837 0.867121
 0.989346 0.001837 0.001837 0.006979

MOTIF 3-AAAGAAAT STREME-3
letter-probability matrix: alength= 4 w= 8 nsites= 19 P= 7.6e-001
 0.945073 0.009473 0.009473 0.035982
 0.945073 0.009473 0.009473 0.035982
 0.945073 0.009473 0.009473 0.035982
 0.035982 0.009473 0.918564 0.035982
 0.945073 0.009473 0.009473 0.035982
 0.945073 0.009473 0.009473 0.035982
 0.945073 0.009473 0.009473 0.035982
 0.035982 0.009473 0.009473 0.945073

MOTIF 4-ATCAAAAT STREME-4
letter-probability matrix: alength= 4 w= 8 nsites= 8 P= 1.0e+000
 0.987821 0.002100 0.002100 0.007978
 0.287868 0.002100 0.002100 0.707931
 0.007978 0.981943 0.002100 0.007978
 0.987821 0.002100 0.002100 0.007978
 0.987821 0.002100 0.002100 0.007978
 0.987821 0.002100 0.002100 0.007978
 0.848101 0.141821 0.002100 0.007978
 0.007978 0.002100 0.141821 0.848101

MOTIF 5-AATAAGKG STREME-5
letter-probability matrix: alength= 4 w= 8 nsites= 11 P= 1.0e+000
 0.993380 0.001142 0.001142 0.004337
 0.993380 0.001142 0.001142 0.004337
 0.080285 0.077090 0.001142 0.841483
 0.917432 0.001142 0.077090 0.004337
 0.993380 0.001142 0.001142 0.004337
 0.004337 0.001142 0.990185 0.004337
 0.080285 0.001142 0.306407 0.612166
 0.080285 0.077090 0.762340 0.080285

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Stopped because maximum number of motifs (5) reached.
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COMMAND:	streme --p ../result/final_prediction/K562/fasta/RankLinear5.0_60/NCOA2.fasta --oc ../result/final_prediction/K562/inference_raw/STREME/RankLinear5.0_60_NCOA2/ --w 8 --nmotifs 5 --verbosity 1
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CPU:		c22n11.farnam.hpc.yale.internal
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FINALTIME:	1.28 seconds
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