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STREME - Sensitive, Thorough, Rapid, Enriched Motif Elicitation
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MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800)

For further information on how to interpret these results please access https://meme-suite.org/meme.
To get a copy of the MEME Suite software please access https://meme-suite.org.

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REFERENCE
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If you use this program in your research, please cite:

Timothy L. Bailey,
"STREME: Accurate and versatile sequence motif discovery",
bioRxiv, (preprint), Nov. 23, 2020.
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ALPHABET= ACGT

strands: + -

Background letter frequencies
A 0.234 C 0.266 G 0.266 T 0.234 

MOTIF 1-CCACAAGA STREME-1
letter-probability matrix: alength= 4 w= 8 nsites= 21 P= 2.4e-001
 0.001805 0.994336 0.002054 0.001805
 0.023950 0.972191 0.002054 0.001805
 0.983855 0.002054 0.012286 0.001805
 0.001805 0.994336 0.002054 0.001805
 0.671383 0.002054 0.055549 0.271014
 0.864317 0.131824 0.002054 0.001805
 0.001805 0.002054 0.972191 0.023950
 0.886925 0.002054 0.002054 0.108968

MOTIF 2-CGAGATCT STREME-2
letter-probability matrix: alength= 4 w= 8 nsites= 17 P= 5.0e-001
 0.002729 0.991439 0.003104 0.002729
 0.002729 0.003104 0.991439 0.002729
 0.991063 0.003104 0.003104 0.002729
 0.002729 0.083962 0.829724 0.083586
 0.910206 0.003104 0.083962 0.002729
 0.164965 0.003104 0.003104 0.828827
 0.002729 0.829464 0.165079 0.002729
 0.083586 0.003104 0.083962 0.829348

MOTIF 3-AGAGATAA STREME-3
letter-probability matrix: alength= 4 w= 8 nsites= 42 P= 6.5e-001
 0.808129 0.001432 0.001432 0.189007
 0.157337 0.038740 0.707007 0.096915
 0.933127 0.001432 0.001432 0.064009
 0.049215 0.001432 0.948094 0.001259
 0.958569 0.001432 0.001432 0.038567
 0.001259 0.001432 0.001432 0.995877
 0.995877 0.001432 0.001432 0.001259
 0.995877 0.001432 0.001432 0.001259

MOTIF 4-AGGGGCGT STREME-4
letter-probability matrix: alength= 4 w= 8 nsites= 38 P= 7.0e-001
 0.864280 0.084672 0.001592 0.049456
 0.071155 0.043065 0.884380 0.001399
 0.042873 0.043065 0.912662 0.001399
 0.042873 0.001592 0.954136 0.001399
 0.001399 0.001592 0.954136 0.042873
 0.134674 0.862335 0.001592 0.001399
 0.001399 0.001592 0.895002 0.102006
 0.001399 0.001592 0.186161 0.810847

MOTIF 5-CCCACCCC STREME-5
letter-probability matrix: alength= 4 w= 8 nsites= 41 P= 9.5e-001
 0.001031 0.996766 0.001172 0.001031
 0.208158 0.759097 0.031714 0.001031
 0.160247 0.807008 0.001172 0.031572
 0.899497 0.001172 0.098300 0.001031
 0.001031 0.996766 0.001172 0.001031
 0.001031 0.996766 0.001172 0.001031
 0.001031 0.772848 0.001172 0.224949
 0.001031 0.996766 0.001172 0.001031

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Stopped because maximum number of motifs (5) reached.
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COMMAND:	streme --p ../result/final_prediction/K562/fasta/RankLinear5.0_60/NCOA1.fasta --oc ../result/final_prediction/K562/inference_raw/STREME/RankLinear5.0_60_NCOA1/ --w 8 --nmotifs 5 --verbosity 1
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CPU:		c22n04.farnam.hpc.yale.internal
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FINALTIME:	1.67 seconds
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