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STREME - Sensitive, Thorough, Rapid, Enriched Motif Elicitation
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MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800)

For further information on how to interpret these results please access https://meme-suite.org/meme.
To get a copy of the MEME Suite software please access https://meme-suite.org.

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REFERENCE
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If you use this program in your research, please cite:

Timothy L. Bailey,
"STREME: Accurate and versatile sequence motif discovery",
bioRxiv, (preprint), Nov. 23, 2020.
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ALPHABET= ACGT

strands: + -

Background letter frequencies
A 0.228 C 0.272 G 0.272 T 0.228 

MOTIF 1-TGACGTCA STREME-1
letter-probability matrix: alength= 4 w= 8 nsites= 59 P= 2.5e-002
 0.020755 0.024700 0.024700 0.929845
 0.020755 0.024700 0.933791 0.020755
 0.929845 0.024700 0.024700 0.020755
 0.020755 0.933791 0.024700 0.020755
 0.020755 0.024700 0.933791 0.020755
 0.020755 0.024700 0.024700 0.929845
 0.020755 0.933791 0.024700 0.020755
 0.929845 0.024700 0.024700 0.020755

MOTIF 2-CACGAGGA STREME-2
letter-probability matrix: alength= 4 w= 8 nsites= 27 P= 5.0e-001
 0.128801 0.867420 0.002053 0.001725
 0.836846 0.054438 0.002053 0.106663
 0.054110 0.889727 0.002053 0.054110
 0.001725 0.002053 0.942111 0.054110
 0.867713 0.054438 0.023739 0.054110
 0.023411 0.002053 0.884703 0.089833
 0.001725 0.002053 0.994496 0.001725
 0.731908 0.054438 0.106991 0.106663

MOTIF 3-CCCCGCCC STREME-3
letter-probability matrix: alength= 4 w= 8 nsites= 51 P= 9.7e-001
 0.078478 0.781757 0.042497 0.097268
 0.014264 0.961790 0.004182 0.019764
 0.038656 0.867506 0.083305 0.010533
 0.045939 0.897294 0.023799 0.032969
 0.079998 0.001251 0.917699 0.001051
 0.032969 0.927745 0.038235 0.001051
 0.009650 0.954194 0.017210 0.018946
 0.032969 0.874954 0.001251 0.090826

MOTIF 4-CAAGAACA STREME-4
letter-probability matrix: alength= 4 w= 8 nsites= 19 P= 1.0e+000
 0.020755 0.933791 0.024700 0.020755
 0.929845 0.024700 0.024700 0.020755
 0.929845 0.024700 0.024700 0.020755
 0.020755 0.024700 0.933791 0.020755
 0.929845 0.024700 0.024700 0.020755
 0.929845 0.024700 0.024700 0.020755
 0.020755 0.933791 0.024700 0.020755
 0.929845 0.024700 0.024700 0.020755

MOTIF 5-AACCATTG STREME-5
letter-probability matrix: alength= 4 w= 8 nsites= 14 P= 1.0e+000
 0.860674 0.068576 0.002587 0.068163
 0.860674 0.002587 0.068576 0.068163
 0.002173 0.993066 0.002587 0.002173
 0.068163 0.795098 0.068576 0.068163
 0.728057 0.002587 0.201193 0.068163
 0.002173 0.068576 0.068576 0.860674
 0.068163 0.068576 0.002587 0.860674
 0.002173 0.002587 0.993066 0.002173

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Stopped because maximum number of motifs (5) reached.
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COMMAND:	streme --p ../result/final_prediction/K562/fasta/RankLinear5.0_60/NBN.fasta --oc ../result/final_prediction/K562/inference_raw/STREME/RankLinear5.0_60_NBN/ --w 8 --nmotifs 5 --verbosity 1
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CPU:		c22n07.farnam.hpc.yale.internal
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FINALTIME:	1.53 seconds
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