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STREME - Sensitive, Thorough, Rapid, Enriched Motif Elicitation
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MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800)

For further information on how to interpret these results please access https://meme-suite.org/meme.
To get a copy of the MEME Suite software please access https://meme-suite.org.

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REFERENCE
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If you use this program in your research, please cite:

Timothy L. Bailey,
"STREME: Accurate and versatile sequence motif discovery",
bioRxiv, (preprint), Nov. 23, 2020.
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ALPHABET= ACGT

strands: + -

Background letter frequencies
A 0.277 C 0.223 G 0.223 T 0.277 

MOTIF 1-AATAARAG STREME-1
letter-probability matrix: alength= 4 w= 8 nsites= 197 P= 2.2e-005
 0.963634 0.000225 0.035861 0.000280
 0.888350 0.000225 0.000225 0.111201
 0.000280 0.000225 0.000225 0.999270
 0.996373 0.000225 0.000225 0.003178
 0.764875 0.038268 0.149347 0.047509
 0.604283 0.000225 0.345792 0.049699
 0.985222 0.000225 0.014273 0.000280
 0.000280 0.000225 0.999215 0.000280

MOTIF 2-CACAGCCT STREME-2
letter-probability matrix: alength= 4 w= 8 nsites= 25 P= 5.0e-001
 0.026235 0.948931 0.023209 0.001626
 0.955112 0.001306 0.041956 0.001626
 0.042276 0.914142 0.001306 0.042276
 0.955112 0.001306 0.001306 0.042276
 0.042276 0.123847 0.791601 0.042276
 0.165279 0.828056 0.001306 0.005359
 0.083057 0.914011 0.001306 0.001626
 0.083057 0.164694 0.001306 0.750944

MOTIF 3-GTTGCCAT STREME-3
letter-probability matrix: alength= 4 w= 8 nsites= 16 P= 5.0e-001
 0.002469 0.001983 0.993079 0.002469
 0.002469 0.001983 0.001983 0.993565
 0.002469 0.063702 0.001983 0.931846
 0.126105 0.001983 0.869443 0.002469
 0.064188 0.869641 0.001983 0.064188
 0.002469 0.869443 0.001983 0.126105
 0.931846 0.001983 0.063702 0.002469
 0.188825 0.001983 0.001983 0.807209

MOTIF 4-GACTTTTA STREME-4
letter-probability matrix: alength= 4 w= 8 nsites= 23 P= 7.6e-001
 0.025209 0.020245 0.929336 0.025209
 0.934300 0.020245 0.020245 0.025209
 0.025209 0.929336 0.020245 0.025209
 0.025209 0.020245 0.020245 0.934300
 0.025209 0.020245 0.020245 0.934300
 0.025209 0.020245 0.020245 0.934300
 0.025209 0.020245 0.020245 0.934300
 0.934300 0.020245 0.020245 0.025209

MOTIF 5-AGCTGCCA STREME-5
letter-probability matrix: alength= 4 w= 8 nsites= 22 P= 7.6e-001
 0.994287 0.001761 0.001761 0.002192
 0.002192 0.001761 0.993855 0.002192
 0.056987 0.773877 0.001761 0.167375
 0.002192 0.056556 0.001761 0.939492
 0.002192 0.001761 0.993855 0.002192
 0.002192 0.993855 0.001761 0.002192
 0.002192 0.663845 0.111527 0.222436
 0.994287 0.001761 0.001761 0.002192

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Stopped because maximum number of motifs (5) reached.
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COMMAND:	streme --p ../result/final_prediction/K562/fasta/RankLinear5.0_60/MYNN.fasta --oc ../result/final_prediction/K562/inference_raw/STREME/RankLinear5.0_60_MYNN/ --w 8 --nmotifs 5 --verbosity 1
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CPU:		c22n09.farnam.hpc.yale.internal
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FINALTIME:	1.41 seconds
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