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STREME - Sensitive, Thorough, Rapid, Enriched Motif Elicitation
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MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800)

For further information on how to interpret these results please access https://meme-suite.org/meme.
To get a copy of the MEME Suite software please access https://meme-suite.org.

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REFERENCE
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If you use this program in your research, please cite:

Timothy L. Bailey,
"STREME: Accurate and versatile sequence motif discovery",
bioRxiv, (preprint), Nov. 23, 2020.
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ALPHABET= ACGT

strands: + -

Background letter frequencies
A 0.23 C 0.271 G 0.271 T 0.23 

MOTIF 1-RCCACGTG STREME-1
letter-probability matrix: alength= 4 w= 8 nsites= 196 P= 1.8e-003
 0.447126 0.085598 0.467010 0.000266
 0.135818 0.863602 0.000314 0.000266
 0.000266 0.999153 0.000314 0.000266
 0.904694 0.000314 0.029851 0.065141
 0.000266 0.799696 0.000314 0.199724
 0.054335 0.000314 0.945085 0.000266
 0.008336 0.044105 0.000314 0.947245
 0.000266 0.000314 0.999153 0.000266

MOTIF 2-ACYAGGKG STREME-2
letter-probability matrix: alength= 4 w= 8 nsites= 52 P= 2.4e-001
 0.997057 0.001033 0.001033 0.000876
 0.000876 0.997214 0.001033 0.000876
 0.187078 0.492577 0.001033 0.319312
 0.997057 0.001033 0.001033 0.000876
 0.000876 0.001033 0.997214 0.000876
 0.272456 0.001033 0.725635 0.000876
 0.000876 0.001033 0.462742 0.535348
 0.000876 0.038463 0.826911 0.133749

MOTIF 3-AAAAGCAA STREME-3
letter-probability matrix: alength= 4 w= 8 nsites= 32 P= 5.0e-001
 0.957759 0.001284 0.039867 0.001089
 0.930534 0.034188 0.001284 0.033994
 0.831715 0.100103 0.001284 0.066898
 0.798599 0.067199 0.067199 0.067004
 0.067110 0.034188 0.831803 0.066898
 0.133345 0.831377 0.001284 0.033994
 0.963438 0.001284 0.001284 0.033994
 0.864087 0.001284 0.133539 0.001089

MOTIF 4-GAGATAAG STREME-4
letter-probability matrix: alength= 4 w= 8 nsites= 33 P= 5.0e-001
 0.106606 0.172369 0.705361 0.015664
 0.855283 0.001367 0.142190 0.001160
 0.015664 0.036403 0.946773 0.001160
 0.926034 0.036403 0.001367 0.036196
 0.001160 0.001367 0.001367 0.996105
 0.855283 0.142190 0.001367 0.001160
 0.954368 0.001367 0.036403 0.007861
 0.001160 0.015871 0.911625 0.071344

MOTIF 5-VAGGAAGT STREME-5
letter-probability matrix: alength= 4 w= 8 nsites= 37 P= 7.6e-001
 0.276933 0.343107 0.232010 0.147951
 0.821782 0.000957 0.176450 0.000812
 0.035468 0.000957 0.903597 0.059978
 0.000812 0.119527 0.878850 0.000812
 0.962619 0.000957 0.000957 0.035468
 0.979848 0.008238 0.000957 0.010958
 0.074342 0.182911 0.668406 0.074342
 0.000812 0.000957 0.000957 0.997275

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Stopped because maximum number of motifs (5) reached.
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COMMAND:	streme --p ../result/final_prediction/K562/fasta/RankLinear5.0_60/MYC.fasta --oc ../result/final_prediction/K562/inference_raw/STREME/RankLinear5.0_60_MYC/ --w 8 --nmotifs 5 --verbosity 1
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CPU:		c17n10.farnam.hpc.yale.internal
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FINALTIME:	1.63 seconds
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