********************************************************************************
STREME - Sensitive, Thorough, Rapid, Enriched Motif Elicitation
********************************************************************************
MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800)

For further information on how to interpret these results please access https://meme-suite.org/meme.
To get a copy of the MEME Suite software please access https://meme-suite.org.

********************************************************************************


********************************************************************************
REFERENCE
********************************************************************************
If you use this program in your research, please cite:

Timothy L. Bailey,
"STREME: Accurate and versatile sequence motif discovery",
bioRxiv, (preprint), Nov. 23, 2020.
********************************************************************************


ALPHABET= ACGT

strands: + -

Background letter frequencies
A 0.217 C 0.282 G 0.282 T 0.217 

MOTIF 1-CATGGCAA STREME-1
letter-probability matrix: alength= 4 w= 8 nsites= 124 P= 1.8e-003
 0.000309 0.989123 0.000402 0.010166
 0.724273 0.263461 0.011957 0.000309
 0.049862 0.059651 0.015234 0.875252
 0.202006 0.000402 0.797283 0.000309
 0.109567 0.000402 0.889722 0.000309
 0.000309 0.900894 0.007029 0.091768
 0.939589 0.000402 0.049843 0.010166
 0.998887 0.000402 0.000402 0.000309

MOTIF 2-CCACGTGG STREME-2
letter-probability matrix: alength= 4 w= 8 nsites= 67 P= 2.5e-002
 0.294219 0.626782 0.054608 0.024392
 0.000691 0.986717 0.011902 0.000691
 0.997515 0.000897 0.000897 0.000691
 0.000691 0.997722 0.000897 0.000691
 0.000691 0.000897 0.997722 0.000691
 0.000691 0.000897 0.000897 0.997515
 0.000691 0.011902 0.986717 0.000691
 0.024392 0.054608 0.626782 0.294219

MOTIF 3-AGTTACCG STREME-3
letter-probability matrix: alength= 4 w= 8 nsites= 30 P= 9.5e-002
 0.928864 0.025682 0.025682 0.019773
 0.019773 0.025682 0.934773 0.019773
 0.019773 0.025682 0.025682 0.928864
 0.019773 0.025682 0.025682 0.928864
 0.928864 0.025682 0.025682 0.019773
 0.019773 0.934773 0.025682 0.019773
 0.019773 0.934773 0.025682 0.019773
 0.019773 0.025682 0.934773 0.019773

MOTIF 4-CTGTCACT STREME-4
letter-probability matrix: alength= 4 w= 8 nsites= 55 P= 5.0e-001
 0.104116 0.738898 0.026856 0.130130
 0.003174 0.052662 0.052579 0.891585
 0.083030 0.001050 0.915112 0.000808
 0.026573 0.026815 0.005978 0.940635
 0.026573 0.942679 0.029940 0.000808
 0.906282 0.005978 0.078343 0.009397
 0.029698 0.839246 0.078718 0.052337
 0.038572 0.126800 0.052579 0.782048

MOTIF 5-CCCTCCCT STREME-5
letter-probability matrix: alength= 4 w= 8 nsites= 42 P= 7.7e-001
 0.017179 0.945560 0.006186 0.031074
 0.034729 0.948033 0.001228 0.016010
 0.122045 0.810741 0.031357 0.035857
 0.102232 0.001228 0.056043 0.840496
 0.000945 0.906203 0.061778 0.031074
 0.013418 0.983060 0.001228 0.002294
 0.061300 0.876074 0.001228 0.061397
 0.000945 0.184064 0.061583 0.753408

********************************************************************************
Stopped because maximum number of motifs (5) reached.
********************************************************************************
COMMAND:	streme --p ../result/final_prediction/K562/fasta/RankLinear5.0_60/MXI1.fasta --oc ../result/final_prediction/K562/inference_raw/STREME/RankLinear5.0_60_MXI1/ --w 8 --nmotifs 5 --verbosity 1
********************************************************************************
CPU:		c17n09.farnam.hpc.yale.internal
********************************************************************************
FINALTIME:	1.60 seconds
********************************************************************************