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STREME - Sensitive, Thorough, Rapid, Enriched Motif Elicitation
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MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800)

For further information on how to interpret these results please access https://meme-suite.org/meme.
To get a copy of the MEME Suite software please access https://meme-suite.org.

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REFERENCE
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If you use this program in your research, please cite:

Timothy L. Bailey,
"STREME: Accurate and versatile sequence motif discovery",
bioRxiv, (preprint), Nov. 23, 2020.
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ALPHABET= ACGT

strands: + -

Background letter frequencies
A 0.233 C 0.267 G 0.267 T 0.233 

MOTIF 1-ACGTCATY STREME-1
letter-probability matrix: alength= 4 w= 8 nsites= 86 P= 8.2e-004
 0.874003 0.000568 0.044935 0.080495
 0.015237 0.927495 0.000568 0.056700
 0.047359 0.000568 0.951578 0.000495
 0.000495 0.162605 0.044792 0.792108
 0.050869 0.948067 0.000568 0.000495
 0.977525 0.000568 0.021412 0.000495
 0.006598 0.216363 0.059628 0.717411
 0.074380 0.526999 0.000568 0.398053

MOTIF 2-ACTCGGGA STREME-2
letter-probability matrix: alength= 4 w= 8 nsites= 19 P= 2.4e-001
 0.819197 0.002233 0.176624 0.001947
 0.059890 0.935930 0.002233 0.001947
 0.001947 0.060742 0.002233 0.935079
 0.001947 0.819857 0.118306 0.059890
 0.001947 0.002233 0.993873 0.001947
 0.001947 0.002233 0.993873 0.001947
 0.059890 0.002233 0.935930 0.001947
 0.993587 0.002233 0.002233 0.001947

MOTIF 3-CCTGCGTC STREME-3
letter-probability matrix: alength= 4 w= 8 nsites= 23 P= 3.0e-001
 0.001489 0.950992 0.046030 0.001489
 0.001489 0.950992 0.046030 0.001489
 0.001489 0.001708 0.001708 0.995095
 0.001489 0.001708 0.995314 0.001489
 0.001489 0.995314 0.001708 0.001489
 0.001489 0.001708 0.995314 0.001489
 0.179636 0.001708 0.001708 0.816948
 0.001489 0.995314 0.001708 0.001489

MOTIF 4-AGCWGGGA STREME-4
letter-probability matrix: alength= 4 w= 8 nsites= 58 P= 6.4e-001
 0.920506 0.001160 0.001160 0.077173
 0.031126 0.001160 0.966702 0.001012
 0.001012 0.996816 0.001160 0.001012
 0.535967 0.061486 0.031275 0.371273
 0.031126 0.001160 0.966702 0.001012
 0.131923 0.001160 0.865905 0.001012
 0.031126 0.001160 0.954235 0.013478
 0.752202 0.107979 0.108692 0.031126

MOTIF 5-ATTTTTTG STREME-5
letter-probability matrix: alength= 4 w= 8 nsites= 14 P= 1.0e+000
 0.930264 0.024282 0.024282 0.021173
 0.021173 0.024282 0.024282 0.930264
 0.021173 0.024282 0.024282 0.930264
 0.021173 0.024282 0.024282 0.930264
 0.021173 0.024282 0.024282 0.930264
 0.021173 0.024282 0.024282 0.930264
 0.021173 0.024282 0.024282 0.930264
 0.021173 0.024282 0.933373 0.021173

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Stopped because maximum number of motifs (5) reached.
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COMMAND:	streme --p ../result/final_prediction/K562/fasta/RankLinear5.0_60/MTA1.fasta --oc ../result/final_prediction/K562/inference_raw/STREME/RankLinear5.0_60_MTA1/ --w 8 --nmotifs 5 --verbosity 1
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CPU:		c23n01.farnam.hpc.yale.internal
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FINALTIME:	1.65 seconds
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