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STREME - Sensitive, Thorough, Rapid, Enriched Motif Elicitation
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MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800)

For further information on how to interpret these results please access https://meme-suite.org/meme.
To get a copy of the MEME Suite software please access https://meme-suite.org.

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REFERENCE
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If you use this program in your research, please cite:

Timothy L. Bailey,
"STREME: Accurate and versatile sequence motif discovery",
bioRxiv, (preprint), Nov. 23, 2020.
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ALPHABET= ACGT

strands: + -

Background letter frequencies
A 0.263 C 0.237 G 0.237 T 0.263 

MOTIF 1-AGCRATTC STREME-1
letter-probability matrix: alength= 4 w= 8 nsites= 18 P= 5.0e-001
 0.993033 0.002242 0.002242 0.002482
 0.002482 0.002242 0.992793 0.002482
 0.002482 0.927296 0.002242 0.067979
 0.663429 0.002242 0.331847 0.002482
 0.993033 0.002242 0.002242 0.002482
 0.002482 0.002242 0.002242 0.993033
 0.002482 0.002242 0.002242 0.993033
 0.067979 0.927296 0.002242 0.002482

MOTIF 2-AAATTAGC STREME-2
letter-probability matrix: alength= 4 w= 8 nsites= 19 P= 5.0e-001
 0.993095 0.002222 0.002222 0.002460
 0.863056 0.002222 0.002222 0.132499
 0.993095 0.002222 0.002222 0.002460
 0.002460 0.002222 0.002222 0.993095
 0.002460 0.002222 0.002222 0.993095
 0.993095 0.002222 0.002222 0.002460
 0.002460 0.002222 0.992857 0.002460
 0.002460 0.992857 0.002222 0.002460

MOTIF 3-CCTCAGCC STREME-3
letter-probability matrix: alength= 4 w= 8 nsites= 30 P= 7.0e-001
 0.023882 0.930664 0.021573 0.023882
 0.023882 0.930664 0.021573 0.023882
 0.023882 0.021573 0.021573 0.932973
 0.023882 0.930664 0.021573 0.023882
 0.932973 0.021573 0.021573 0.023882
 0.023882 0.021573 0.930664 0.023882
 0.023882 0.930664 0.021573 0.023882
 0.023882 0.930664 0.021573 0.023882

MOTIF 4-CTGTAATC STREME-4
letter-probability matrix: alength= 4 w= 8 nsites= 37 P= 7.0e-001
 0.039125 0.882763 0.001291 0.076821
 0.001429 0.001291 0.001291 0.995990
 0.039125 0.038987 0.841452 0.080437
 0.001429 0.001291 0.001291 0.995990
 0.920598 0.076683 0.001291 0.001429
 0.813548 0.001291 0.183732 0.001429
 0.001429 0.001291 0.038987 0.958294
 0.001429 0.862098 0.076804 0.059669

MOTIF 5-CGAGATCA STREME-5
letter-probability matrix: alength= 4 w= 8 nsites= 30 P= 1.0e+000
 0.123100 0.722237 0.001296 0.153366
 0.039296 0.001296 0.957973 0.001435
 0.844408 0.115000 0.039157 0.001435
 0.001435 0.001296 0.919991 0.077278
 0.920129 0.001296 0.077139 0.001435
 0.001435 0.153473 0.039157 0.805935
 0.001435 0.919991 0.077139 0.001435
 0.806303 0.001296 0.115122 0.077278

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Stopped because maximum number of motifs (5) reached.
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COMMAND:	streme --p ../result/final_prediction/K562/fasta/RankLinear5.0_60/MLLT1.fasta --oc ../result/final_prediction/K562/inference_raw/STREME/RankLinear5.0_60_MLLT1/ --w 8 --nmotifs 5 --verbosity 1
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CPU:		c17n10.farnam.hpc.yale.internal
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FINALTIME:	1.62 seconds
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