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STREME - Sensitive, Thorough, Rapid, Enriched Motif Elicitation
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MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800)

For further information on how to interpret these results please access https://meme-suite.org/meme.
To get a copy of the MEME Suite software please access https://meme-suite.org.

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REFERENCE
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If you use this program in your research, please cite:

Timothy L. Bailey,
"STREME: Accurate and versatile sequence motif discovery",
bioRxiv, (preprint), Nov. 23, 2020.
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ALPHABET= ACGT

strands: + -

Background letter frequencies
A 0.235 C 0.265 G 0.265 T 0.235 

MOTIF 1-CTTGAAAC STREME-1
letter-probability matrix: alength= 4 w= 8 nsites= 73 P= 5.3e-003
 0.000635 0.998016 0.000713 0.000635
 0.000635 0.000713 0.000713 0.997938
 0.175089 0.094799 0.185127 0.544986
 0.000635 0.000713 0.990277 0.008375
 0.997938 0.000713 0.000713 0.000635
 0.979242 0.000713 0.000713 0.019331
 0.997938 0.000713 0.000713 0.000635
 0.000635 0.998016 0.000713 0.000635

MOTIF 2-GTGCTGAA STREME-2
letter-probability matrix: alength= 4 w= 8 nsites= 121 P= 9.0e-003
 0.000360 0.000404 0.988270 0.010967
 0.000360 0.000404 0.000404 0.998832
 0.010949 0.083531 0.819476 0.086044
 0.004744 0.994493 0.000404 0.000360
 0.006066 0.000404 0.000404 0.993126
 0.005655 0.000404 0.993581 0.000360
 0.954195 0.011011 0.034434 0.000360
 0.794699 0.145181 0.025730 0.034390

MOTIF 3-MGCTGTCC STREME-3
letter-probability matrix: alength= 4 w= 8 nsites= 112 P= 8.5e-002
 0.377359 0.488230 0.000467 0.133944
 0.120510 0.000467 0.806080 0.072943
 0.000416 0.998702 0.000467 0.000416
 0.012652 0.000467 0.000467 0.986414
 0.012652 0.012703 0.974229 0.000416
 0.000416 0.000467 0.022729 0.976388
 0.000416 0.998702 0.000467 0.000416
 0.012652 0.974229 0.000467 0.012652

MOTIF 4-CCTYSGCC STREME-4
letter-probability matrix: alength= 4 w= 8 nsites= 19 P= 2.4e-001
 0.002235 0.993019 0.002511 0.002235
 0.002235 0.927226 0.068303 0.002235
 0.002235 0.002511 0.002511 0.992743
 0.002235 0.332323 0.002511 0.662931
 0.002235 0.332323 0.663206 0.002235
 0.002235 0.002511 0.993019 0.002235
 0.002235 0.993019 0.002511 0.002235
 0.002235 0.795428 0.200101 0.002235

MOTIF 5-CCAGCTTC STREME-5
letter-probability matrix: alength= 4 w= 8 nsites= 17 P= 1.0e+000
 0.003036 0.990517 0.003410 0.003036
 0.003036 0.811491 0.003410 0.182062
 0.900774 0.003410 0.092779 0.003036
 0.272008 0.003410 0.721545 0.003036
 0.003036 0.990517 0.003410 0.003036
 0.003036 0.003410 0.003410 0.990143
 0.003036 0.003410 0.003410 0.990143
 0.003036 0.990517 0.003410 0.003036

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Stopped because maximum number of motifs (5) reached.
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COMMAND:	streme --p ../result/final_prediction/K562/fasta/RankLinear5.0_60/MIER1.fasta --oc ../result/final_prediction/K562/inference_raw/STREME/RankLinear5.0_60_MIER1/ --w 8 --nmotifs 5 --verbosity 1
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CPU:		c22n12.farnam.hpc.yale.internal
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FINALTIME:	1.75 seconds
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