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STREME - Sensitive, Thorough, Rapid, Enriched Motif Elicitation
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MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800)

For further information on how to interpret these results please access https://meme-suite.org/meme.
To get a copy of the MEME Suite software please access https://meme-suite.org.

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REFERENCE
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If you use this program in your research, please cite:

Timothy L. Bailey,
"STREME: Accurate and versatile sequence motif discovery",
bioRxiv, (preprint), Nov. 23, 2020.
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ALPHABET= ACGT

strands: + -

Background letter frequencies
A 0.208 C 0.292 G 0.292 T 0.208 

MOTIF 1-CCACGTGC STREME-1
letter-probability matrix: alength= 4 w= 8 nsites= 173 P= 2.1e-002
 0.043890 0.848874 0.088977 0.018259
 0.006268 0.987427 0.000465 0.005840
 0.666478 0.033631 0.174276 0.125615
 0.000330 0.817157 0.000465 0.182048
 0.054409 0.008557 0.936704 0.000330
 0.004004 0.000465 0.000465 0.995067
 0.011350 0.005975 0.974299 0.008376
 0.000330 0.711849 0.158511 0.129309

MOTIF 2-CTGGGACT STREME-2
letter-probability matrix: alength= 4 w= 8 nsites= 52 P= 6.9e-002
 0.000878 0.967732 0.030512 0.000878
 0.030156 0.059884 0.089163 0.820797
 0.030156 0.013354 0.955612 0.000878
 0.030156 0.030512 0.879804 0.059528
 0.030156 0.059884 0.879804 0.030156
 0.864537 0.133351 0.001234 0.000878
 0.030156 0.844369 0.001234 0.124241
 0.054145 0.059979 0.001234 0.884641

MOTIF 3-CGCCTCCC STREME-3
letter-probability matrix: alength= 4 w= 8 nsites= 38 P= 3.0e-001
 0.121312 0.815376 0.042442 0.020870
 0.008232 0.177932 0.804038 0.009798
 0.013300 0.975639 0.010163 0.000898
 0.000898 0.826479 0.141719 0.030904
 0.013300 0.001263 0.031221 0.954216
 0.030856 0.933391 0.001263 0.034490
 0.003649 0.853734 0.111760 0.030856
 0.030856 0.826527 0.091331 0.051286

MOTIF 4-GCAGGAGA STREME-4
letter-probability matrix: alength= 4 w= 8 nsites= 64 P= 3.5e-001
 0.020959 0.131507 0.696876 0.150657
 0.073273 0.595133 0.066250 0.265345
 0.761642 0.173891 0.063857 0.000610
 0.000610 0.000858 0.997922 0.000610
 0.020959 0.033526 0.753274 0.192241
 0.977325 0.000858 0.021207 0.000610
 0.000610 0.000858 0.997922 0.000610
 0.764276 0.132116 0.000858 0.102750

MOTIF 5-AGATAAGA STREME-5
letter-probability matrix: alength= 4 w= 8 nsites= 20 P= 8.8e-001
 0.942595 0.002172 0.002172 0.053062
 0.156263 0.002172 0.840021 0.001544
 0.766384 0.002172 0.229900 0.001544
 0.001544 0.178662 0.002172 0.817622
 0.942595 0.002172 0.053689 0.001544
 0.921268 0.002172 0.002172 0.074388
 0.310981 0.023498 0.663977 0.001544
 0.891077 0.053689 0.053689 0.001544

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Stopped because maximum number of motifs (5) reached.
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COMMAND:	streme --p ../result/final_prediction/K562/fasta/RankLinear5.0_60/MGA.fasta --oc ../result/final_prediction/K562/inference_raw/STREME/RankLinear5.0_60_MGA/ --w 8 --nmotifs 5 --verbosity 1
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CPU:		c22n06.farnam.hpc.yale.internal
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FINALTIME:	1.51 seconds
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