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STREME - Sensitive, Thorough, Rapid, Enriched Motif Elicitation
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MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800)

For further information on how to interpret these results please access https://meme-suite.org/meme.
To get a copy of the MEME Suite software please access https://meme-suite.org.

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REFERENCE
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If you use this program in your research, please cite:

Timothy L. Bailey,
"STREME: Accurate and versatile sequence motif discovery",
bioRxiv, (preprint), Nov. 23, 2020.
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ALPHABET= ACGT

strands: + -

Background letter frequencies
A 0.288 C 0.212 G 0.212 T 0.288 

MOTIF 1-AAAAATAG STREME-1
letter-probability matrix: alength= 4 w= 8 nsites= 184 P= 1.1e-005
 0.866511 0.062974 0.016339 0.054177
 0.736467 0.000245 0.044545 0.218743
 0.945742 0.000245 0.006271 0.047742
 0.927256 0.000245 0.000245 0.072253
 0.933963 0.000245 0.000245 0.065546
 0.000334 0.000245 0.000245 0.999175
 0.999175 0.000245 0.000245 0.000334
 0.000334 0.009704 0.989627 0.000334

MOTIF 2-CWGATAAG STREME-2
letter-probability matrix: alength= 4 w= 8 nsites= 65 P= 4.9e-002
 0.201912 0.623718 0.137716 0.036654
 0.318349 0.064517 0.000649 0.616485
 0.000885 0.000649 0.997581 0.000885
 0.955215 0.000649 0.043251 0.000885
 0.043624 0.000649 0.000649 0.955078
 0.989013 0.000649 0.000649 0.009688
 0.933983 0.021916 0.000649 0.043452
 0.069225 0.000649 0.929241 0.000885

MOTIF 3-MTGAGTCA STREME-3
letter-probability matrix: alength= 4 w= 8 nsites= 46 P= 1.2e-001
 0.525410 0.345137 0.000778 0.128675
 0.001060 0.000778 0.000778 0.997385
 0.128593 0.000778 0.716233 0.154396
 0.997385 0.000778 0.000778 0.001060
 0.001060 0.000778 0.997103 0.001060
 0.001060 0.000778 0.000778 0.997385
 0.001060 0.832889 0.000778 0.165273
 0.895325 0.051807 0.000778 0.052090

MOTIF 4-ATTTTTAG STREME-4
letter-probability matrix: alength= 4 w= 8 nsites= 42 P= 3.3e-001
 0.995372 0.001376 0.001376 0.001876
 0.001876 0.001376 0.001376 0.995372
 0.098973 0.001376 0.046458 0.853193
 0.046958 0.025667 0.001376 0.925999
 0.227584 0.001376 0.110738 0.660302
 0.001876 0.001376 0.001376 0.995372
 0.995372 0.001376 0.001376 0.001876
 0.001876 0.001376 0.994872 0.001876

MOTIF 5-AGGAATGT STREME-5
letter-probability matrix: alength= 4 w= 8 nsites= 26 P= 7.6e-001
 0.842152 0.062774 0.062873 0.032201
 0.014084 0.031859 0.952771 0.001286
 0.014084 0.000944 0.859926 0.125046
 0.897869 0.006857 0.093988 0.001286
 0.913914 0.031859 0.052941 0.001286
 0.188282 0.062774 0.093988 0.654957
 0.001286 0.000944 0.965569 0.032201
 0.094330 0.093788 0.013742 0.798140

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Stopped because maximum number of motifs (5) reached.
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COMMAND:	streme --p ../result/final_prediction/K562/fasta/RankLinear5.0_60/MEF2D.fasta --oc ../result/final_prediction/K562/inference_raw/STREME/RankLinear5.0_60_MEF2D/ --w 8 --nmotifs 5 --verbosity 1
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CPU:		c22n04.farnam.hpc.yale.internal
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FINALTIME:	1.69 seconds
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