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STREME - Sensitive, Thorough, Rapid, Enriched Motif Elicitation
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MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800)

For further information on how to interpret these results please access https://meme-suite.org/meme.
To get a copy of the MEME Suite software please access https://meme-suite.org.

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REFERENCE
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If you use this program in your research, please cite:

Timothy L. Bailey,
"STREME: Accurate and versatile sequence motif discovery",
bioRxiv, (preprint), Nov. 23, 2020.
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ALPHABET= ACGT

strands: + -

Background letter frequencies
A 0.279 C 0.221 G 0.221 T 0.279 

MOTIF 1-AAAAATAG STREME-1
letter-probability matrix: alength= 4 w= 8 nsites= 176 P= 1.1e-009
 0.928827 0.049344 0.000258 0.021570
 0.669725 0.000435 0.084093 0.245747
 0.987380 0.003601 0.008333 0.000686
 0.951642 0.000258 0.000999 0.047101
 0.984017 0.000258 0.000258 0.015468
 0.000325 0.000258 0.000258 0.999160
 0.995122 0.004295 0.000258 0.000325
 0.000325 0.000258 0.999093 0.000325

MOTIF 2-AWGATAAG STREME-2
letter-probability matrix: alength= 4 w= 8 nsites= 25 P= 1.2e-001
 0.667382 0.001623 0.001623 0.329371
 0.563673 0.001623 0.001623 0.433081
 0.002046 0.001623 0.994285 0.002046
 0.943845 0.001623 0.001623 0.052908
 0.002046 0.001623 0.001623 0.994708
 0.994708 0.001623 0.001623 0.002046
 0.892983 0.103348 0.001623 0.002046
 0.002046 0.001623 0.994285 0.002046

MOTIF 3-TGAYRTCA STREME-3
letter-probability matrix: alength= 4 w= 8 nsites= 49 P= 2.4e-001
 0.001123 0.000891 0.000891 0.997095
 0.001123 0.000891 0.940813 0.057173
 0.927106 0.000891 0.000891 0.071111
 0.071542 0.461116 0.143587 0.323755
 0.323755 0.143587 0.461116 0.071542
 0.071111 0.000891 0.000891 0.927106
 0.057173 0.940813 0.000891 0.001123
 0.997095 0.000891 0.000891 0.001123

MOTIF 4-GACTCAYS STREME-4
letter-probability matrix: alength= 4 w= 8 nsites= 72 P= 3.3e-001
 0.093816 0.000495 0.905066 0.000624
 0.914280 0.031526 0.000495 0.053700
 0.000624 0.652069 0.222310 0.124997
 0.000624 0.000495 0.037918 0.960963
 0.016126 0.982755 0.000495 0.000624
 0.954546 0.000495 0.044336 0.000624
 0.148583 0.305858 0.017878 0.527682
 0.182421 0.520600 0.296356 0.000624

MOTIF 5-CCCCTCCC STREME-5
letter-probability matrix: alength= 4 w= 8 nsites= 25 P= 5.0e-001
 0.001513 0.952195 0.001200 0.045092
 0.076973 0.920314 0.001200 0.001513
 0.001513 0.995774 0.001200 0.001513
 0.039122 0.920556 0.001200 0.039122
 0.152678 0.001200 0.038809 0.807312
 0.001513 0.920435 0.001200 0.076852
 0.001513 0.958165 0.038809 0.001513
 0.001513 0.995774 0.001200 0.001513

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Stopped because maximum number of motifs (5) reached.
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COMMAND:	streme --p ../result/final_prediction/K562/fasta/RankLinear5.0_60/MEF2A.fasta --oc ../result/final_prediction/K562/inference_raw/STREME/RankLinear5.0_60_MEF2A/ --w 8 --nmotifs 5 --verbosity 1
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CPU:		c22n11.farnam.hpc.yale.internal
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FINALTIME:	2.49 seconds
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